Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20525
Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL |
---|---|---|---|---|---|
remove | |||||
4,298,629 | + | BWI76_RS20520 | 0.66 | -1.3 | |
4,298,672 | - | BWI76_RS20520 | 0.69 | +2.3 | |
4,298,885 | - | BWI76_RS20520 | 0.82 | +1.0 | |
4,298,905 | - | BWI76_RS20520 | 0.83 | -1.7 | |
4,298,914 | - | BWI76_RS20520 | 0.83 | +0.8 | |
4,299,045 | - | +0.8 | |||
4,299,245 | + | -1.1 | |||
4,299,253 | - | +0.1 | |||
4,299,253 | - | +0.9 | |||
4,299,253 | - | +1.8 | |||
4,299,386 | - | +0.4 | |||
4,299,756 | - | BWI76_RS20525 | 0.39 | +0.4 | |
4,299,825 | + | BWI76_RS20525 | 0.46 | -1.5 | |
4,299,979 | - | BWI76_RS20525 | 0.62 | -1.3 | |
4,300,019 | + | BWI76_RS20525 | 0.66 | -0.1 | |
4,300,207 | + | BWI76_RS20525 | 0.85 | +0.5 | |
4,300,215 | - | BWI76_RS20525 | 0.85 | +1.0 | |
4,300,215 | - | BWI76_RS20525 | 0.85 | +0.0 | |
4,300,241 | + | BWI76_RS20525 | 0.88 | +0.7 | |
4,300,275 | + | +0.0 | |||
4,300,417 | - | -2.6 | |||
4,300,434 | + | +0.3 | |||
4,300,447 | + | +0.7 | |||
4,300,488 | - | -3.3 | |||
4,300,563 | + | BWI76_RS20530 | 0.20 | +0.6 | |
4,300,704 | - | BWI76_RS20530 | 0.59 | -1.1 | |
4,300,726 | + | BWI76_RS20530 | 0.66 | -1.2 |
Or see this region's nucleotide sequence