Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19250

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19245 and BWI76_RS19250 are separated by 384 nucleotidesBWI76_RS19250 and BWI76_RS19255 overlap by 1 nucleotides BWI76_RS19245: BWI76_RS19245 - dimethylargininase, at 4,003,952 to 4,004,713 _RS19245 BWI76_RS19250: BWI76_RS19250 - multidrug transporter subunit MdtA, at 4,005,098 to 4,006,342 _RS19250 BWI76_RS19255: BWI76_RS19255 - multidrug transporter subunit MdtB, at 4,006,342 to 4,009,464 _RS19255 Position (kb) 4005 4006 4007Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4004.152 kb on - strand, within BWI76_RS19245at 4004.159 kb on - strand, within BWI76_RS19245at 4004.271 kb on - strand, within BWI76_RS19245at 4004.273 kb on + strand, within BWI76_RS19245at 4004.588 kb on + strand, within BWI76_RS19245at 4004.662 kb on - strandat 4004.741 kb on + strandat 4004.805 kb on - strandat 4004.994 kb on + strandat 4005.307 kb on - strand, within BWI76_RS19250at 4005.364 kb on - strand, within BWI76_RS19250at 4005.514 kb on - strand, within BWI76_RS19250at 4005.716 kb on - strand, within BWI76_RS19250at 4005.716 kb on - strand, within BWI76_RS19250at 4005.716 kb on - strand, within BWI76_RS19250at 4005.798 kb on + strand, within BWI76_RS19250at 4006.164 kb on + strand, within BWI76_RS19250at 4006.234 kb on + strandat 4006.427 kb on + strandat 4006.707 kb on - strand, within BWI76_RS19255at 4006.745 kb on - strand, within BWI76_RS19255at 4006.783 kb on + strand, within BWI76_RS19255at 4006.944 kb on + strand, within BWI76_RS19255at 4006.967 kb on - strand, within BWI76_RS19255at 4007.185 kb on - strand, within BWI76_RS19255at 4007.230 kb on - strand, within BWI76_RS19255at 4007.323 kb on - strand, within BWI76_RS19255

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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4,004,152 - BWI76_RS19245 0.26 +0.4
4,004,159 - BWI76_RS19245 0.27 +4.1
4,004,271 - BWI76_RS19245 0.42 -0.5
4,004,273 + BWI76_RS19245 0.42 -2.1
4,004,588 + BWI76_RS19245 0.83 +0.7
4,004,662 - -0.8
4,004,741 + +0.8
4,004,805 - -3.4
4,004,994 + -1.4
4,005,307 - BWI76_RS19250 0.17 -0.1
4,005,364 - BWI76_RS19250 0.21 +0.9
4,005,514 - BWI76_RS19250 0.33 +0.4
4,005,716 - BWI76_RS19250 0.50 +0.8
4,005,716 - BWI76_RS19250 0.50 +1.3
4,005,716 - BWI76_RS19250 0.50 +0.9
4,005,798 + BWI76_RS19250 0.56 -0.0
4,006,164 + BWI76_RS19250 0.86 -0.4
4,006,234 + +0.0
4,006,427 + +0.5
4,006,707 - BWI76_RS19255 0.12 -0.6
4,006,745 - BWI76_RS19255 0.13 +0.7
4,006,783 + BWI76_RS19255 0.14 -1.4
4,006,944 + BWI76_RS19255 0.19 -1.1
4,006,967 - BWI76_RS19255 0.20 -3.0
4,007,185 - BWI76_RS19255 0.27 -0.9
4,007,230 - BWI76_RS19255 0.28 +0.1
4,007,323 - BWI76_RS19255 0.31 +0.8

Or see this region's nucleotide sequence