Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17570

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17560 and BWI76_RS17565 are separated by 64 nucleotidesBWI76_RS17565 and BWI76_RS17570 are separated by 65 nucleotidesBWI76_RS17570 and BWI76_RS17575 are separated by 12 nucleotides BWI76_RS17560: BWI76_RS17560 - formate dehydrogenase subunit alpha, at 3,645,275 to 3,647,422 _RS17560 BWI76_RS17565: BWI76_RS17565 - hypothetical protein, at 3,647,487 to 3,648,092 _RS17565 BWI76_RS17570: BWI76_RS17570 - iron-sulfur-binding protein, at 3,648,158 to 3,648,616 _RS17570 BWI76_RS17575: BWI76_RS17575 - hypothetical protein, at 3,648,629 to 3,651,841 _RS17575 Position (kb) 3648 3649Strain fitness (log2 ratio) -3 -2 -1 0 1at 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.446 kb on + strandat 3647.447 kb on - strandat 3647.571 kb on - strand, within BWI76_RS17565at 3647.834 kb on + strand, within BWI76_RS17565at 3648.411 kb on - strand, within BWI76_RS17570at 3648.498 kb on - strand, within BWI76_RS17570at 3648.905 kb on + strandat 3648.928 kb on - strandat 3649.014 kb on + strand, within BWI76_RS17575at 3649.090 kb on + strand, within BWI76_RS17575at 3649.186 kb on + strand, within BWI76_RS17575at 3649.304 kb on - strand, within BWI76_RS17575at 3649.522 kb on - strand, within BWI76_RS17575at 3649.561 kb on - strand, within BWI76_RS17575

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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3,647,446 + +1.2
3,647,446 + +1.6
3,647,446 + +0.4
3,647,446 + +1.4
3,647,447 - +0.1
3,647,571 - BWI76_RS17565 0.14 -0.2
3,647,834 + BWI76_RS17565 0.57 +1.1
3,648,411 - BWI76_RS17570 0.55 -2.8
3,648,498 - BWI76_RS17570 0.74 +1.1
3,648,905 + +0.1
3,648,928 - +0.1
3,649,014 + BWI76_RS17575 0.12 -0.1
3,649,090 + BWI76_RS17575 0.14 -1.0
3,649,186 + BWI76_RS17575 0.17 -1.2
3,649,304 - BWI76_RS17575 0.21 +0.2
3,649,522 - BWI76_RS17575 0.28 -2.9
3,649,561 - BWI76_RS17575 0.29 +0.7

Or see this region's nucleotide sequence