Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14135

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14130 and BWI76_RS14135 overlap by 4 nucleotidesBWI76_RS14135 and BWI76_RS14140 are separated by 2 nucleotides BWI76_RS14130: BWI76_RS14130 - malto-oligosyltrehalose trehalohydrolase, at 2,952,159 to 2,953,946 _RS14130 BWI76_RS14135: BWI76_RS14135 - malto-oligosyltrehalose synthase, at 2,953,943 to 2,956,483 _RS14135 BWI76_RS14140: BWI76_RS14140 - glycogen debranching enzyme, at 2,956,486 to 2,958,561 _RS14140 Position (kb) 2953 2954 2955 2956 2957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2953.047 kb on - strand, within BWI76_RS14130at 2953.111 kb on - strand, within BWI76_RS14130at 2953.445 kb on + strand, within BWI76_RS14130at 2953.453 kb on - strandat 2953.906 kb on + strandat 2954.351 kb on + strand, within BWI76_RS14135at 2954.433 kb on - strand, within BWI76_RS14135at 2955.042 kb on - strand, within BWI76_RS14135at 2955.573 kb on + strand, within BWI76_RS14135at 2955.675 kb on + strand, within BWI76_RS14135at 2955.995 kb on - strand, within BWI76_RS14135at 2956.080 kb on - strand, within BWI76_RS14135at 2956.263 kb on - strandat 2956.575 kb on + strandat 2956.595 kb on + strandat 2956.601 kb on + strandat 2957.044 kb on - strand, within BWI76_RS14140at 2957.300 kb on + strand, within BWI76_RS14140at 2957.308 kb on - strand, within BWI76_RS14140

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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2,953,047 - BWI76_RS14130 0.50 +0.1
2,953,111 - BWI76_RS14130 0.53 -0.6
2,953,445 + BWI76_RS14130 0.72 -1.8
2,953,453 - +2.1
2,953,906 + -0.7
2,954,351 + BWI76_RS14135 0.16 -0.4
2,954,433 - BWI76_RS14135 0.19 -3.2
2,955,042 - BWI76_RS14135 0.43 -2.1
2,955,573 + BWI76_RS14135 0.64 +0.6
2,955,675 + BWI76_RS14135 0.68 +1.8
2,955,995 - BWI76_RS14135 0.81 +0.9
2,956,080 - BWI76_RS14135 0.84 +0.6
2,956,263 - +0.6
2,956,575 + +0.0
2,956,595 + -0.4
2,956,601 + -0.1
2,957,044 - BWI76_RS14140 0.27 +0.3
2,957,300 + BWI76_RS14140 0.39 -0.6
2,957,308 - BWI76_RS14140 0.40 +0.8

Or see this region's nucleotide sequence