Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13610

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13605 and BWI76_RS13610 are separated by 43 nucleotidesBWI76_RS13610 and BWI76_RS13615 are separated by 26 nucleotides BWI76_RS13605: BWI76_RS13605 - porin, at 2,834,210 to 2,835,814 _RS13605 BWI76_RS13610: BWI76_RS13610 - sugar transporter, at 2,835,858 to 2,837,240 _RS13610 BWI76_RS13615: BWI76_RS13615 - sugar hydrolase, at 2,837,267 to 2,838,838 _RS13615 Position (kb) 2835 2836 2837 2838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2834.880 kb on + strand, within BWI76_RS13605at 2834.898 kb on + strand, within BWI76_RS13605at 2835.054 kb on + strand, within BWI76_RS13605at 2835.243 kb on - strand, within BWI76_RS13605at 2835.311 kb on - strand, within BWI76_RS13605at 2835.591 kb on - strand, within BWI76_RS13605at 2835.625 kb on + strand, within BWI76_RS13605at 2835.625 kb on + strand, within BWI76_RS13605at 2835.795 kb on - strandat 2835.936 kb on - strandat 2835.967 kb on + strandat 2835.999 kb on - strand, within BWI76_RS13610at 2836.351 kb on - strand, within BWI76_RS13610at 2836.576 kb on - strand, within BWI76_RS13610at 2836.731 kb on - strand, within BWI76_RS13610at 2838.041 kb on + strand, within BWI76_RS13615at 2838.049 kb on - strand, within BWI76_RS13615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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2,834,880 + BWI76_RS13605 0.42 -2.7
2,834,898 + BWI76_RS13605 0.43 -1.4
2,835,054 + BWI76_RS13605 0.53 -0.4
2,835,243 - BWI76_RS13605 0.64 -4.5
2,835,311 - BWI76_RS13605 0.69 -1.1
2,835,591 - BWI76_RS13605 0.86 -0.3
2,835,625 + BWI76_RS13605 0.88 +1.0
2,835,625 + BWI76_RS13605 0.88 +0.4
2,835,795 - -2.5
2,835,936 - +0.8
2,835,967 + +0.2
2,835,999 - BWI76_RS13610 0.10 -1.0
2,836,351 - BWI76_RS13610 0.36 -0.3
2,836,576 - BWI76_RS13610 0.52 -2.1
2,836,731 - BWI76_RS13610 0.63 -0.9
2,838,041 + BWI76_RS13615 0.49 -2.8
2,838,049 - BWI76_RS13615 0.50 +0.4

Or see this region's nucleotide sequence