Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11390

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11385 and BWI76_RS11390 are separated by 96 nucleotidesBWI76_RS11390 and BWI76_RS11395 overlap by 4 nucleotidesBWI76_RS11395 and BWI76_RS11400 are separated by 180 nucleotides BWI76_RS11385: BWI76_RS11385 - TonB-dependent siderophore receptor, at 2,399,055 to 2,401,385 _RS11385 BWI76_RS11390: BWI76_RS11390 - iron dicitrate transport regulator FecR, at 2,401,482 to 2,402,429 _RS11390 BWI76_RS11395: BWI76_RS11395 - RNA polymerase sigma factor FecI, at 2,402,426 to 2,402,947 _RS11395 BWI76_RS11400: BWI76_RS11400 - SAM-dependent methyltransferase, at 2,403,128 to 2,403,280 _RS11400 Position (kb) 2401 2402 2403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2400.482 kb on + strand, within BWI76_RS11385at 2400.487 kb on + strand, within BWI76_RS11385at 2400.495 kb on - strand, within BWI76_RS11385at 2400.495 kb on - strand, within BWI76_RS11385at 2400.500 kb on - strand, within BWI76_RS11385at 2400.585 kb on - strand, within BWI76_RS11385at 2401.081 kb on + strand, within BWI76_RS11385at 2401.158 kb on + strandat 2401.248 kb on + strandat 2401.626 kb on + strand, within BWI76_RS11390at 2401.944 kb on + strand, within BWI76_RS11390at 2402.090 kb on - strand, within BWI76_RS11390at 2402.309 kb on - strand, within BWI76_RS11390at 2402.412 kb on + strandat 2402.582 kb on - strand, within BWI76_RS11395at 2402.707 kb on - strand, within BWI76_RS11395at 2402.819 kb on - strand, within BWI76_RS11395at 2402.862 kb on - strand, within BWI76_RS11395at 2402.882 kb on + strand, within BWI76_RS11395at 2402.890 kb on - strand, within BWI76_RS11395at 2402.925 kb on - strandat 2403.133 kb on + strandat 2403.155 kb on + strand, within BWI76_RS11400at 2403.163 kb on - strand, within BWI76_RS11400at 2403.165 kb on - strand, within BWI76_RS11400at 2403.165 kb on - strand, within BWI76_RS11400at 2403.188 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.238 kb on + strand, within BWI76_RS11400at 2403.248 kb on + strand, within BWI76_RS11400at 2403.350 kb on + strandat 2403.404 kb on + strandat 2403.412 kb on - strandat 2403.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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2,400,482 + BWI76_RS11385 0.61 -0.2
2,400,487 + BWI76_RS11385 0.61 +0.2
2,400,495 - BWI76_RS11385 0.62 -1.4
2,400,495 - BWI76_RS11385 0.62 -0.1
2,400,500 - BWI76_RS11385 0.62 -1.1
2,400,585 - BWI76_RS11385 0.66 +0.5
2,401,081 + BWI76_RS11385 0.87 -0.3
2,401,158 + -0.2
2,401,248 + +0.7
2,401,626 + BWI76_RS11390 0.15 -3.0
2,401,944 + BWI76_RS11390 0.49 +1.0
2,402,090 - BWI76_RS11390 0.64 +2.6
2,402,309 - BWI76_RS11390 0.87 +0.6
2,402,412 + -0.5
2,402,582 - BWI76_RS11395 0.30 -1.8
2,402,707 - BWI76_RS11395 0.54 +2.3
2,402,819 - BWI76_RS11395 0.75 +0.4
2,402,862 - BWI76_RS11395 0.84 +0.4
2,402,882 + BWI76_RS11395 0.87 -0.4
2,402,890 - BWI76_RS11395 0.89 +0.5
2,402,925 - -0.4
2,403,133 + -0.0
2,403,155 + BWI76_RS11400 0.18 +0.1
2,403,163 - BWI76_RS11400 0.23 +0.2
2,403,165 - BWI76_RS11400 0.24 -2.4
2,403,165 - BWI76_RS11400 0.24 -1.1
2,403,188 + BWI76_RS11400 0.39 -0.4
2,403,238 + BWI76_RS11400 0.72 -1.0
2,403,238 + BWI76_RS11400 0.72 +0.7
2,403,238 + BWI76_RS11400 0.72 -2.0
2,403,238 + BWI76_RS11400 0.72 +0.0
2,403,248 + BWI76_RS11400 0.78 +0.2
2,403,350 + -2.8
2,403,404 + +1.2
2,403,412 - -1.1
2,403,421 + -0.8

Or see this region's nucleotide sequence