Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07820

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07815 and BWI76_RS07820 are separated by 127 nucleotidesBWI76_RS07820 and BWI76_RS07825 are separated by 102 nucleotides BWI76_RS07815: BWI76_RS07815 - hypothetical protein, at 1,656,575 to 1,657,816 _RS07815 BWI76_RS07820: BWI76_RS07820 - S-methyl-5-thioribose kinase, at 1,657,944 to 1,659,143 _RS07820 BWI76_RS07825: BWI76_RS07825 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,659,246 to 1,660,274 _RS07825 Position (kb) 1657 1658 1659 1660Strain fitness (log2 ratio) -3 -2 -1 0 1at 1657.029 kb on - strand, within BWI76_RS07815at 1657.270 kb on - strand, within BWI76_RS07815at 1657.318 kb on + strand, within BWI76_RS07815at 1657.363 kb on - strand, within BWI76_RS07815at 1657.724 kb on + strandat 1657.825 kb on + strandat 1658.006 kb on + strandat 1658.024 kb on + strandat 1658.800 kb on + strand, within BWI76_RS07820at 1658.927 kb on - strand, within BWI76_RS07820at 1659.263 kb on - strandat 1659.270 kb on - strandat 1659.276 kb on - strandat 1659.344 kb on + strandat 1659.450 kb on + strand, within BWI76_RS07825at 1659.536 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.885 kb on - strand, within BWI76_RS07825at 1659.920 kb on - strand, within BWI76_RS07825at 1660.053 kb on - strand, within BWI76_RS07825at 1660.136 kb on - strand, within BWI76_RS07825

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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1,657,029 - BWI76_RS07815 0.37 -3.4
1,657,270 - BWI76_RS07815 0.56 -1.9
1,657,318 + BWI76_RS07815 0.60 +0.2
1,657,363 - BWI76_RS07815 0.63 +0.0
1,657,724 + -0.1
1,657,825 + +0.8
1,658,006 + -0.4
1,658,024 + +1.1
1,658,800 + BWI76_RS07820 0.71 -3.7
1,658,927 - BWI76_RS07820 0.82 -3.2
1,659,263 - +0.9
1,659,270 - +0.5
1,659,276 - -0.9
1,659,344 + +0.1
1,659,450 + BWI76_RS07825 0.20 +0.2
1,659,536 - BWI76_RS07825 0.28 +0.3
1,659,831 - BWI76_RS07825 0.57 +1.0
1,659,831 - BWI76_RS07825 0.57 -0.7
1,659,831 - BWI76_RS07825 0.57 -1.1
1,659,885 - BWI76_RS07825 0.62 +0.5
1,659,920 - BWI76_RS07825 0.66 +0.9
1,660,053 - BWI76_RS07825 0.78 -0.8
1,660,136 - BWI76_RS07825 0.86 +0.4

Or see this region's nucleotide sequence