Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07385

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07375 and BWI76_RS07380 are separated by 37 nucleotidesBWI76_RS07380 and BWI76_RS07385 are separated by 127 nucleotidesBWI76_RS07385 and BWI76_RS07390 are separated by 180 nucleotides BWI76_RS07375: BWI76_RS07375 - dehydrogenase, at 1,556,124 to 1,557,275 _RS07375 BWI76_RS07380: BWI76_RS07380 - hypothetical protein, at 1,557,313 to 1,557,729 _RS07380 BWI76_RS07385: BWI76_RS07385 - short-chain dehydrogenase/reductase SDR, at 1,557,857 to 1,558,606 _RS07385 BWI76_RS07390: BWI76_RS07390 - putative LysR-family transcriptional regulator, at 1,558,787 to 1,559,716 _RS07390 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1557.105 kb on - strand, within BWI76_RS07375at 1557.318 kb on - strandat 1557.318 kb on - strandat 1557.344 kb on + strandat 1557.362 kb on - strand, within BWI76_RS07380at 1557.482 kb on - strand, within BWI76_RS07380at 1557.767 kb on - strandat 1557.772 kb on + strandat 1557.811 kb on - strandat 1557.816 kb on + strandat 1557.824 kb on - strandat 1557.939 kb on + strandat 1558.175 kb on + strand, within BWI76_RS07385at 1558.394 kb on - strand, within BWI76_RS07385at 1558.839 kb on + strandat 1558.883 kb on - strand, within BWI76_RS07390at 1558.883 kb on - strand, within BWI76_RS07390at 1558.946 kb on - strandat 1559.178 kb on + strand, within BWI76_RS07390at 1559.178 kb on + strand, within BWI76_RS07390at 1559.233 kb on - strand, within BWI76_RS07390at 1559.243 kb on - strand, within BWI76_RS07390at 1559.298 kb on + strand, within BWI76_RS07390at 1559.298 kb on + strand, within BWI76_RS07390at 1559.313 kb on - strand, within BWI76_RS07390at 1559.321 kb on - strand, within BWI76_RS07390at 1559.415 kb on - strand, within BWI76_RS07390at 1559.451 kb on + strand, within BWI76_RS07390at 1559.456 kb on + strand, within BWI76_RS07390at 1559.456 kb on + strand, within BWI76_RS07390at 1559.459 kb on - strand, within BWI76_RS07390at 1559.464 kb on - strand, within BWI76_RS07390at 1559.488 kb on + strand, within BWI76_RS07390at 1559.488 kb on + strand, within BWI76_RS07390at 1559.490 kb on - strand, within BWI76_RS07390at 1559.495 kb on - strand, within BWI76_RS07390at 1559.500 kb on - strand, within BWI76_RS07390at 1559.512 kb on - strand, within BWI76_RS07390at 1559.512 kb on - strand, within BWI76_RS07390at 1559.524 kb on + strand, within BWI76_RS07390at 1559.547 kb on - strand, within BWI76_RS07390at 1559.592 kb on - strand, within BWI76_RS07390at 1559.603 kb on + strand, within BWI76_RS07390

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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1,557,105 - BWI76_RS07375 0.85 +1.4
1,557,318 - +1.3
1,557,318 - +0.2
1,557,344 + +0.2
1,557,362 - BWI76_RS07380 0.12 -1.6
1,557,482 - BWI76_RS07380 0.41 +0.9
1,557,767 - -3.0
1,557,772 + +0.5
1,557,811 - -3.8
1,557,816 + +0.4
1,557,824 - +0.2
1,557,939 + +1.2
1,558,175 + BWI76_RS07385 0.42 -1.4
1,558,394 - BWI76_RS07385 0.72 -2.1
1,558,839 + +0.5
1,558,883 - BWI76_RS07390 0.10 +1.2
1,558,883 - BWI76_RS07390 0.10 -1.8
1,558,946 - +1.2
1,559,178 + BWI76_RS07390 0.42 +1.7
1,559,178 + BWI76_RS07390 0.42 -0.7
1,559,233 - BWI76_RS07390 0.48 -1.1
1,559,243 - BWI76_RS07390 0.49 +0.4
1,559,298 + BWI76_RS07390 0.55 +0.4
1,559,298 + BWI76_RS07390 0.55 -3.6
1,559,313 - BWI76_RS07390 0.57 -2.5
1,559,321 - BWI76_RS07390 0.57 +0.4
1,559,415 - BWI76_RS07390 0.68 +0.5
1,559,451 + BWI76_RS07390 0.71 +1.2
1,559,456 + BWI76_RS07390 0.72 -0.8
1,559,456 + BWI76_RS07390 0.72 +1.1
1,559,459 - BWI76_RS07390 0.72 -2.1
1,559,464 - BWI76_RS07390 0.73 +0.7
1,559,488 + BWI76_RS07390 0.75 -1.0
1,559,488 + BWI76_RS07390 0.75 +0.2
1,559,490 - BWI76_RS07390 0.76 -1.4
1,559,495 - BWI76_RS07390 0.76 -2.5
1,559,500 - BWI76_RS07390 0.77 -1.6
1,559,512 - BWI76_RS07390 0.78 +0.8
1,559,512 - BWI76_RS07390 0.78 -2.7
1,559,524 + BWI76_RS07390 0.79 +0.8
1,559,547 - BWI76_RS07390 0.82 -0.8
1,559,592 - BWI76_RS07390 0.87 -3.0
1,559,603 + BWI76_RS07390 0.88 +1.6

Or see this region's nucleotide sequence