Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06875 and BWI76_RS06880 are separated by 322 nucleotides BWI76_RS06880 and BWI76_RS06885 are separated by 1 nucleotides BWI76_RS06885 and BWI76_RS06890 are separated by 34 nucleotides
BWI76_RS06875: BWI76_RS06875 - conjugal transfer protein TraB, at 1,444,037 to 1,444,831
_RS06875
BWI76_RS06880: BWI76_RS06880 - biopolymer transport protein ExbD/TolR, at 1,445,154 to 1,445,561
_RS06880
BWI76_RS06885: BWI76_RS06885 - TonB family protein, at 1,445,563 to 1,446,306
_RS06885
BWI76_RS06890: BWI76_RS06890 - TonB-dependent receptor, at 1,446,341 to 1,448,581
_RS06890
Position (kb) 1445
1446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1444.180 kb on + strand, within BWI76_RS06875 at 1444.180 kb on + strand, within BWI76_RS06875 at 1444.188 kb on - strand, within BWI76_RS06875 at 1444.188 kb on - strand, within BWI76_RS06875 at 1444.188 kb on - strand, within BWI76_RS06875 at 1444.188 kb on - strand, within BWI76_RS06875 at 1444.188 kb on - strand, within BWI76_RS06875 at 1444.279 kb on + strand, within BWI76_RS06875 at 1444.373 kb on + strand, within BWI76_RS06875 at 1444.381 kb on - strand, within BWI76_RS06875 at 1444.392 kb on + strand, within BWI76_RS06875 at 1444.567 kb on - strand, within BWI76_RS06875 at 1444.716 kb on - strand, within BWI76_RS06875 at 1444.726 kb on + strand, within BWI76_RS06875 at 1444.726 kb on + strand, within BWI76_RS06875 at 1444.734 kb on - strand, within BWI76_RS06875 at 1444.740 kb on + strand, within BWI76_RS06875 at 1444.758 kb on - strand at 1444.836 kb on + strand at 1445.279 kb on - strand, within BWI76_RS06880 at 1445.413 kb on + strand, within BWI76_RS06880 at 1445.454 kb on + strand, within BWI76_RS06880 at 1446.112 kb on - strand, within BWI76_RS06885 at 1446.191 kb on - strand, within BWI76_RS06885 at 1446.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,444,180 + BWI76_RS06875 0.18 +1.5 1,444,180 + BWI76_RS06875 0.18 -1.7 1,444,188 - BWI76_RS06875 0.19 -0.2 1,444,188 - BWI76_RS06875 0.19 +0.5 1,444,188 - BWI76_RS06875 0.19 +0.7 1,444,188 - BWI76_RS06875 0.19 -0.5 1,444,188 - BWI76_RS06875 0.19 +2.0 1,444,279 + BWI76_RS06875 0.30 -1.9 1,444,373 + BWI76_RS06875 0.42 +0.4 1,444,381 - BWI76_RS06875 0.43 -3.0 1,444,392 + BWI76_RS06875 0.45 -2.2 1,444,567 - BWI76_RS06875 0.67 -2.4 1,444,716 - BWI76_RS06875 0.85 +1.2 1,444,726 + BWI76_RS06875 0.87 +1.3 1,444,726 + BWI76_RS06875 0.87 -3.3 1,444,734 - BWI76_RS06875 0.88 -1.7 1,444,740 + BWI76_RS06875 0.88 +0.7 1,444,758 - -0.3 1,444,836 + -3.1 1,445,279 - BWI76_RS06880 0.31 +0.5 1,445,413 + BWI76_RS06880 0.63 +0.6 1,445,454 + BWI76_RS06880 0.74 +1.6 1,446,112 - BWI76_RS06885 0.74 +1.3 1,446,191 - BWI76_RS06885 0.84 +0.5 1,446,519 - +0.4
Or see this region's nucleotide sequence