Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05700 and BWI76_RS05705 are separated by 104 nucleotides BWI76_RS05705 and BWI76_RS05710 are separated by 88 nucleotides BWI76_RS05710 and BWI76_RS05715 are separated by 68 nucleotides
BWI76_RS05700: BWI76_RS05700 - coenzyme F420-dependent NADP oxidoreductase, at 1,198,804 to 1,199,289
_RS05700
BWI76_RS05705: BWI76_RS05705 - transporter, at 1,199,394 to 1,199,666
_RS05705
BWI76_RS05710: BWI76_RS05710 - TetR family transcriptional regulator, at 1,199,755 to 1,200,375
_RS05710
BWI76_RS05715: BWI76_RS05715 - RND family efflux transporter MFP subunit, at 1,200,444 to 1,201,553
_RS05715
Position (kb) 1199
1200
1201 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 1198.758 kb on - strand at 1198.807 kb on + strand at 1198.815 kb on - strand at 1198.863 kb on + strand, within BWI76_RS05700 at 1198.871 kb on - strand, within BWI76_RS05700 at 1198.871 kb on - strand at 1198.912 kb on - strand, within BWI76_RS05700 at 1198.934 kb on - strand, within BWI76_RS05700 at 1198.977 kb on + strand, within BWI76_RS05700 at 1199.007 kb on - strand, within BWI76_RS05700 at 1199.007 kb on - strand, within BWI76_RS05700 at 1199.026 kb on - strand, within BWI76_RS05700 at 1199.046 kb on + strand, within BWI76_RS05700 at 1199.081 kb on + strand, within BWI76_RS05700 at 1199.274 kb on + strand at 1199.400 kb on + strand at 1199.408 kb on - strand at 1199.408 kb on - strand at 1199.642 kb on + strand at 1199.662 kb on + strand at 1199.873 kb on + strand, within BWI76_RS05710 at 1200.078 kb on + strand, within BWI76_RS05710 at 1200.170 kb on + strand, within BWI76_RS05710 at 1200.178 kb on - strand, within BWI76_RS05710 at 1200.270 kb on + strand, within BWI76_RS05710 at 1200.336 kb on + strand at 1200.474 kb on - strand at 1200.679 kb on - strand, within BWI76_RS05715 at 1200.866 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1201.006 kb on + strand, within BWI76_RS05715 at 1201.021 kb on - strand, within BWI76_RS05715 at 1201.220 kb on + strand, within BWI76_RS05715
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,198,758 - +0.4 1,198,807 + +0.7 1,198,815 - -5.4 1,198,863 + BWI76_RS05700 0.12 +0.1 1,198,871 - BWI76_RS05700 0.14 -3.5 1,198,871 - -0.0 1,198,912 - BWI76_RS05700 0.22 -0.7 1,198,934 - BWI76_RS05700 0.27 +0.1 1,198,977 + BWI76_RS05700 0.36 +0.7 1,199,007 - BWI76_RS05700 0.42 -0.9 1,199,007 - BWI76_RS05700 0.42 +0.9 1,199,026 - BWI76_RS05700 0.46 +0.7 1,199,046 + BWI76_RS05700 0.50 +2.8 1,199,081 + BWI76_RS05700 0.57 +3.1 1,199,274 + +0.7 1,199,400 + -4.1 1,199,408 - -0.4 1,199,408 - -0.0 1,199,642 + +0.3 1,199,662 + +0.3 1,199,873 + BWI76_RS05710 0.19 -0.3 1,200,078 + BWI76_RS05710 0.52 -1.0 1,200,170 + BWI76_RS05710 0.67 -3.9 1,200,178 - BWI76_RS05710 0.68 -4.0 1,200,270 + BWI76_RS05710 0.83 -1.3 1,200,336 + -1.0 1,200,474 - +1.6 1,200,679 - BWI76_RS05715 0.21 +0.7 1,200,866 + BWI76_RS05715 0.38 -2.1 1,200,944 + BWI76_RS05715 0.45 +1.8 1,200,944 + BWI76_RS05715 0.45 +0.4 1,201,006 + BWI76_RS05715 0.51 +0.1 1,201,021 - BWI76_RS05715 0.52 -0.9 1,201,220 + BWI76_RS05715 0.70 +0.9
Or see this region's nucleotide sequence