Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03675 and BWI76_RS03680 overlap by 11 nucleotides BWI76_RS03680 and BWI76_RS03685 are separated by 63 nucleotides
BWI76_RS03675: BWI76_RS03675 - restriction modification system DNA specificity domain-containing protein, at 761,928 to 763,247
_RS03675
BWI76_RS03680: BWI76_RS03680 - DNA methyltransferase, at 763,237 to 764,856
_RS03680
BWI76_RS03685: BWI76_RS03685 - restriction endonuclease, at 764,920 to 766,086
_RS03685
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 762.447 kb on - strand, within BWI76_RS03675 at 762.451 kb on + strand, within BWI76_RS03675 at 762.464 kb on + strand, within BWI76_RS03675 at 762.485 kb on + strand, within BWI76_RS03675 at 762.485 kb on + strand, within BWI76_RS03675 at 762.493 kb on - strand, within BWI76_RS03675 at 762.493 kb on - strand, within BWI76_RS03675 at 762.493 kb on - strand at 762.493 kb on - strand, within BWI76_RS03675 at 762.570 kb on + strand, within BWI76_RS03675 at 762.595 kb on + strand, within BWI76_RS03675 at 762.603 kb on - strand, within BWI76_RS03675 at 762.603 kb on - strand, within BWI76_RS03675 at 762.605 kb on + strand, within BWI76_RS03675 at 762.613 kb on - strand, within BWI76_RS03675 at 762.615 kb on - strand, within BWI76_RS03675 at 762.626 kb on - strand, within BWI76_RS03675 at 762.716 kb on - strand, within BWI76_RS03675 at 762.728 kb on - strand, within BWI76_RS03675 at 762.739 kb on - strand, within BWI76_RS03675 at 762.739 kb on - strand, within BWI76_RS03675 at 762.739 kb on - strand, within BWI76_RS03675 at 762.769 kb on - strand, within BWI76_RS03675 at 762.769 kb on - strand, within BWI76_RS03675 at 762.776 kb on + strand, within BWI76_RS03675 at 762.784 kb on - strand, within BWI76_RS03675 at 762.784 kb on - strand, within BWI76_RS03675 at 762.784 kb on - strand, within BWI76_RS03675 at 762.790 kb on - strand, within BWI76_RS03675 at 762.808 kb on - strand, within BWI76_RS03675 at 762.834 kb on - strand, within BWI76_RS03675 at 762.839 kb on - strand, within BWI76_RS03675 at 762.839 kb on - strand, within BWI76_RS03675 at 762.880 kb on + strand, within BWI76_RS03675 at 762.888 kb on - strand, within BWI76_RS03675 at 762.907 kb on - strand, within BWI76_RS03675 at 762.923 kb on - strand, within BWI76_RS03675 at 762.932 kb on - strand, within BWI76_RS03675 at 762.933 kb on - strand, within BWI76_RS03675 at 762.939 kb on - strand, within BWI76_RS03675 at 762.988 kb on - strand, within BWI76_RS03675 at 763.000 kb on - strand, within BWI76_RS03675 at 763.013 kb on + strand, within BWI76_RS03675 at 763.021 kb on - strand, within BWI76_RS03675 at 763.021 kb on - strand, within BWI76_RS03675 at 763.023 kb on - strand, within BWI76_RS03675 at 763.023 kb on - strand, within BWI76_RS03675 at 763.066 kb on + strand, within BWI76_RS03675 at 763.079 kb on - strand, within BWI76_RS03675 at 763.085 kb on - strand, within BWI76_RS03675 at 763.085 kb on - strand, within BWI76_RS03675 at 763.087 kb on + strand, within BWI76_RS03675 at 763.095 kb on + strand, within BWI76_RS03675 at 763.096 kb on - strand, within BWI76_RS03675 at 763.104 kb on - strand, within BWI76_RS03675 at 763.192 kb on - strand at 763.192 kb on - strand at 763.192 kb on - strand at 763.195 kb on + strand at 763.203 kb on - strand at 763.203 kb on - strand at 763.203 kb on - strand at 763.220 kb on + strand at 763.242 kb on + strand at 763.242 kb on + strand at 763.242 kb on + strand at 763.242 kb on + strand at 763.242 kb on + strand at 763.242 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.244 kb on + strand at 763.249 kb on + strand at 763.249 kb on + strand at 763.250 kb on - strand at 763.250 kb on - strand at 763.250 kb on - strand at 763.252 kb on - strand at 763.252 kb on - strand at 763.257 kb on + strand at 763.257 kb on - strand at 763.263 kb on + strand at 763.272 kb on - strand at 763.277 kb on + strand at 763.277 kb on + strand at 763.282 kb on + strand at 763.285 kb on - strand at 763.285 kb on - strand at 763.285 kb on - strand at 763.285 kb on - strand at 763.285 kb on - strand at 763.298 kb on + strand at 763.298 kb on + strand at 763.298 kb on + strand at 763.298 kb on + strand at 763.298 kb on + strand at 763.306 kb on - strand at 763.313 kb on + strand at 763.313 kb on + strand at 763.321 kb on - strand at 763.327 kb on - strand at 763.363 kb on - strand at 763.412 kb on - strand, within BWI76_RS03680 at 763.418 kb on + strand, within BWI76_RS03680 at 763.418 kb on + strand, within BWI76_RS03680 at 763.426 kb on - strand, within BWI76_RS03680 at 763.704 kb on - strand, within BWI76_RS03680 at 763.816 kb on - strand, within BWI76_RS03680 at 763.943 kb on + strand, within BWI76_RS03680 at 763.953 kb on + strand, within BWI76_RS03680 at 763.953 kb on + strand, within BWI76_RS03680 at 764.001 kb on + strand, within BWI76_RS03680 at 764.001 kb on + strand, within BWI76_RS03680 at 764.033 kb on - strand, within BWI76_RS03680 at 764.109 kb on + strand, within BWI76_RS03680 at 764.269 kb on - strand, within BWI76_RS03680 at 764.421 kb on + strand, within BWI76_RS03680 at 764.513 kb on - strand, within BWI76_RS03680 at 764.518 kb on - strand, within BWI76_RS03680 at 764.520 kb on + strand, within BWI76_RS03680 at 764.542 kb on + strand, within BWI76_RS03680 at 764.734 kb on + strand at 764.742 kb on - strand at 764.804 kb on - strand at 764.804 kb on - strand at 764.936 kb on + strand at 764.975 kb on + strand at 764.983 kb on - strand at 765.108 kb on + strand, within BWI76_RS03685 at 765.139 kb on + strand, within BWI76_RS03685 at 765.147 kb on - strand, within BWI76_RS03685 at 765.202 kb on - strand, within BWI76_RS03685 at 765.202 kb on - strand, within BWI76_RS03685 at 765.242 kb on + strand, within BWI76_RS03685 at 765.260 kb on - strand, within BWI76_RS03685 at 765.294 kb on + strand, within BWI76_RS03685 at 765.316 kb on - strand, within BWI76_RS03685 at 765.533 kb on + strand, within BWI76_RS03685 at 765.627 kb on + strand, within BWI76_RS03685 at 765.635 kb on - strand, within BWI76_RS03685 at 765.684 kb on + strand, within BWI76_RS03685 at 765.703 kb on + strand, within BWI76_RS03685 at 765.738 kb on - strand, within BWI76_RS03685 at 765.829 kb on - strand, within BWI76_RS03685 at 765.842 kb on + strand, within BWI76_RS03685 at 765.842 kb on + strand, within BWI76_RS03685
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 762,447 - BWI76_RS03675 0.39 -0.2 762,451 + BWI76_RS03675 0.40 +1.4 762,464 + BWI76_RS03675 0.41 -0.9 762,485 + BWI76_RS03675 0.42 +2.0 762,485 + BWI76_RS03675 0.42 -1.8 762,493 - BWI76_RS03675 0.43 +1.4 762,493 - BWI76_RS03675 0.43 -0.4 762,493 - +1.4 762,493 - BWI76_RS03675 0.43 -1.9 762,570 + BWI76_RS03675 0.49 -2.9 762,595 + BWI76_RS03675 0.51 +1.4 762,603 - BWI76_RS03675 0.51 +2.5 762,603 - BWI76_RS03675 0.51 +0.0 762,605 + BWI76_RS03675 0.51 -1.9 762,613 - BWI76_RS03675 0.52 +0.9 762,615 - BWI76_RS03675 0.52 +0.5 762,626 - BWI76_RS03675 0.53 -1.2 762,716 - BWI76_RS03675 0.60 -0.9 762,728 - BWI76_RS03675 0.61 -1.4 762,739 - BWI76_RS03675 0.61 +1.3 762,739 - BWI76_RS03675 0.61 -0.6 762,739 - BWI76_RS03675 0.61 +3.4 762,769 - BWI76_RS03675 0.64 -0.5 762,769 - BWI76_RS03675 0.64 -3.1 762,776 + BWI76_RS03675 0.64 -0.9 762,784 - BWI76_RS03675 0.65 -1.4 762,784 - BWI76_RS03675 0.65 +0.5 762,784 - BWI76_RS03675 0.65 +1.4 762,790 - BWI76_RS03675 0.65 -1.1 762,808 - BWI76_RS03675 0.67 +1.9 762,834 - BWI76_RS03675 0.69 +1.8 762,839 - BWI76_RS03675 0.69 +1.0 762,839 - BWI76_RS03675 0.69 -2.7 762,880 + BWI76_RS03675 0.72 +0.7 762,888 - BWI76_RS03675 0.73 +0.4 762,907 - BWI76_RS03675 0.74 +0.5 762,923 - BWI76_RS03675 0.75 -3.0 762,932 - BWI76_RS03675 0.76 +0.1 762,933 - BWI76_RS03675 0.76 +1.4 762,939 - BWI76_RS03675 0.77 -1.8 762,988 - BWI76_RS03675 0.80 -0.2 763,000 - BWI76_RS03675 0.81 +1.8 763,013 + BWI76_RS03675 0.82 +1.8 763,021 - BWI76_RS03675 0.83 +0.4 763,021 - BWI76_RS03675 0.83 +0.4 763,023 - BWI76_RS03675 0.83 -0.9 763,023 - BWI76_RS03675 0.83 -2.6 763,066 + BWI76_RS03675 0.86 -1.4 763,079 - BWI76_RS03675 0.87 +0.3 763,085 - BWI76_RS03675 0.88 -0.5 763,085 - BWI76_RS03675 0.88 -0.5 763,087 + BWI76_RS03675 0.88 +1.1 763,095 + BWI76_RS03675 0.88 -1.1 763,096 - BWI76_RS03675 0.88 -0.6 763,104 - BWI76_RS03675 0.89 -0.6 763,192 - +1.4 763,192 - +0.4 763,192 - -0.6 763,195 + +0.4 763,203 - -0.9 763,203 - -2.9 763,203 - -0.3 763,220 + -1.0 763,242 + +0.9 763,242 + -2.3 763,242 + +0.8 763,242 + +0.3 763,242 + -1.6 763,242 + -1.9 763,244 + +0.0 763,244 + -1.8 763,244 + -0.4 763,244 + -0.3 763,244 + +0.4 763,244 + +0.4 763,244 + +0.3 763,244 + -0.5 763,244 + +1.3 763,249 + +0.0 763,249 + +2.9 763,250 - +0.4 763,250 - +0.3 763,250 - +0.3 763,252 - -1.2 763,252 - +0.9 763,257 + -0.2 763,257 - -0.6 763,263 + +0.2 763,272 - -0.2 763,277 + -0.2 763,277 + -0.9 763,282 + +0.4 763,285 - -2.5 763,285 - -0.5 763,285 - -2.8 763,285 - -0.8 763,285 - -1.2 763,298 + -2.5 763,298 + +0.1 763,298 + +0.8 763,298 + -2.8 763,298 + +0.2 763,306 - +0.5 763,313 + -1.3 763,313 + -1.4 763,321 - -1.6 763,327 - +0.4 763,363 - +0.4 763,412 - BWI76_RS03680 0.11 +0.9 763,418 + BWI76_RS03680 0.11 -0.4 763,418 + BWI76_RS03680 0.11 +0.9 763,426 - BWI76_RS03680 0.12 +1.4 763,704 - BWI76_RS03680 0.29 +2.1 763,816 - BWI76_RS03680 0.36 -0.1 763,943 + BWI76_RS03680 0.44 -1.0 763,953 + BWI76_RS03680 0.44 +0.5 763,953 + BWI76_RS03680 0.44 -1.6 764,001 + BWI76_RS03680 0.47 -2.6 764,001 + BWI76_RS03680 0.47 -0.6 764,033 - BWI76_RS03680 0.49 +1.2 764,109 + BWI76_RS03680 0.54 +0.2 764,269 - BWI76_RS03680 0.64 -3.3 764,421 + BWI76_RS03680 0.73 -0.0 764,513 - BWI76_RS03680 0.79 +0.4 764,518 - BWI76_RS03680 0.79 +0.2 764,520 + BWI76_RS03680 0.79 +0.9 764,542 + BWI76_RS03680 0.81 -0.0 764,734 + +0.7 764,742 - +0.9 764,804 - +0.8 764,804 - -2.4 764,936 + +0.8 764,975 + -1.4 764,983 - +0.4 765,108 + BWI76_RS03685 0.16 -0.7 765,139 + BWI76_RS03685 0.19 -0.6 765,147 - BWI76_RS03685 0.19 +0.4 765,202 - BWI76_RS03685 0.24 -1.2 765,202 - BWI76_RS03685 0.24 +0.2 765,242 + BWI76_RS03685 0.28 +0.6 765,260 - BWI76_RS03685 0.29 -1.5 765,294 + BWI76_RS03685 0.32 -1.0 765,316 - BWI76_RS03685 0.34 -1.8 765,533 + BWI76_RS03685 0.53 +0.2 765,627 + BWI76_RS03685 0.61 +0.7 765,635 - BWI76_RS03685 0.61 +1.4 765,684 + BWI76_RS03685 0.65 +1.1 765,703 + BWI76_RS03685 0.67 +0.7 765,738 - BWI76_RS03685 0.70 +1.5 765,829 - BWI76_RS03685 0.78 +0.7 765,842 + BWI76_RS03685 0.79 -1.1 765,842 + BWI76_RS03685 0.79 -0.1
Or see this region's nucleotide sequence