Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02810

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02805 and BWI76_RS02810 overlap by 14 nucleotidesBWI76_RS02810 and BWI76_RS02815 are separated by 44 nucleotides BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830 _RS02805 BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803 _RS02810 BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846 _RS02815 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 572.865 kb on - strandat 573.046 kb on + strand, within BWI76_RS02805at 573.263 kb on + strand, within BWI76_RS02805at 573.268 kb on + strand, within BWI76_RS02805at 573.526 kb on + strand, within BWI76_RS02805at 573.558 kb on + strand, within BWI76_RS02805at 573.881 kb on - strandat 574.280 kb on - strand, within BWI76_RS02810at 574.280 kb on - strand, within BWI76_RS02810at 574.549 kb on - strand, within BWI76_RS02810at 574.598 kb on + strand, within BWI76_RS02810at 574.690 kb on - strand, within BWI76_RS02810at 574.892 kb on - strandat 575.069 kb on + strand, within BWI76_RS02815at 575.351 kb on - strand, within BWI76_RS02815at 575.631 kb on - strand, within BWI76_RS02815at 575.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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572,865 - -2.1
573,046 + BWI76_RS02805 0.23 +0.4
573,263 + BWI76_RS02805 0.45 -3.1
573,268 + BWI76_RS02805 0.45 -2.5
573,526 + BWI76_RS02805 0.70 +0.3
573,558 + BWI76_RS02805 0.73 +0.8
573,881 - +0.8
574,280 - BWI76_RS02810 0.47 -1.5
574,280 - BWI76_RS02810 0.47 +0.5
574,549 - BWI76_RS02810 0.74 +1.9
574,598 + BWI76_RS02810 0.79 -3.5
574,690 - BWI76_RS02810 0.88 -3.7
574,892 - -0.1
575,069 + BWI76_RS02815 0.22 +0.2
575,351 - BWI76_RS02815 0.50 +0.5
575,631 - BWI76_RS02815 0.78 -0.1
575,769 + -2.4

Or see this region's nucleotide sequence