Strain Fitness in Shewanella oneidensis MR-1 around SO4439

Experiment: Ferric citrate electron acceptor; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; ground control
4,626,659	+				-0.2
4,626,661	+				+0.8
4,626,661	+				-0.4
4,626,666	+				-1.0
4,626,666	+				-0.5
4,626,666	+				-0.3
4,626,667	+				-0.2
4,626,669	+				-0.5
4,626,669	+				-1.8
4,626,701	-		SO4438	0.16	-0.7
4,626,772	-		SO4438	0.35	-0.6
4,626,786	-		SO4438	0.38	+2.9
4,626,826	+		SO4438	0.49	+0.5
4,626,826	+		SO4438	0.49	+2.2
4,626,826	+		SO4438	0.49	+0.2
4,626,826	+				+4.0
4,626,826	+		SO4438	0.49	-1.4
4,626,826	+		SO4438	0.49	-1.5
4,626,826	+		SO4438	0.49	-0.4
4,626,826	+		SO4438	0.49	+0.2
4,626,834	-		SO4438	0.51	-0.6
4,626,834	-		SO4438	0.51	+0.7
4,626,834	-		SO4438	0.51	+0.6
4,626,834	-		SO4438	0.51	+2.6
4,626,834	-		SO4438	0.51	+1.1
4,626,834	-		SO4438	0.51	-3.2
4,626,841	+		SO4438	0.53	+1.0
4,626,841	+		SO4438	0.53	+0.3
4,626,841	+		SO4438	0.53	+1.1
4,626,841	+		SO4438	0.53	+0.2
4,626,841	+		SO4438	0.53	-2.2
4,626,841	+		SO4438	0.53	-1.6
4,626,841	+		SO4438	0.53	+0.1
4,626,841	+		SO4438	0.53	+2.5
4,626,841	+		SO4438	0.53	-0.1
4,626,841	+		SO4438	0.53	-0.6
4,626,841	+		SO4438	0.53	+1.0
4,626,841	+		SO4438	0.53	-1.7
4,626,841	+		SO4438	0.53	+1.2
4,626,841	+		SO4438	0.53	+0.9
4,626,841	+		SO4438	0.53	+0.1
4,626,843	+		SO4438	0.54	-0.0
4,626,849	-		SO4438	0.55	-0.2
4,626,849	-		SO4438	0.55	+1.2
4,626,849	-		SO4438	0.55	-0.8
4,626,849	-		SO4438	0.55	-2.8
4,626,849	-		SO4438	0.55	+0.1
4,626,849	-		SO4438	0.55	+0.1
4,626,849	-		SO4438	0.55	-0.4
4,626,849	-		SO4438	0.55	+0.1
4,626,849	-		SO4438	0.55	-2.5
4,626,849	-		SO4438	0.55	+2.0
4,626,849	-		SO4438	0.55	+0.1
4,626,849	-		SO4438	0.55	-0.4
4,626,849	-		SO4438	0.55	-1.9
4,626,849	-		SO4438	0.55	+1.2
4,626,849	-		SO4438	0.55	+0.6
4,626,859	-		SO4438	0.58	+1.3
4,626,867	+		SO4438	0.60	-0.0
4,626,867	+		SO4438	0.60	-0.3
4,626,875	-		SO4438	0.62	-2.8
4,626,886	+		SO4438	0.65	+1.9
4,626,895	-		SO4438	0.67	-0.4
4,626,895	-		SO4438	0.67	+1.0
4,626,897	+		SO4438	0.68	-0.5
4,626,897	+		SO4438	0.68	+0.5
4,626,897	+		SO4438	0.68	-1.0
4,626,897	+		SO4438	0.68	+1.2
4,626,897	+		SO4438	0.68	-1.3
4,626,897	+		SO4438	0.68	+1.5
4,626,904	+		SO4438	0.70	-0.4
4,626,905	-		SO4438	0.70	+2.2
4,626,910	+		SO4438	0.71	-1.3
4,626,912	+		SO4438	0.72	+0.2
4,626,912	+		SO4438	0.72	-1.3
4,626,912	-		SO4438	0.72	-0.7
4,626,917	+		SO4438	0.73	-3.3
4,626,918	-		SO4438	0.74	+0.3
4,626,920	+		SO4438	0.74	+0.1
4,626,920	+		SO4438	0.74	-1.9
4,626,930	+		SO4438	0.77	-0.7
4,626,930	+		SO4438	0.77	+0.2
4,626,941	+		SO4438	0.80	+0.6
4,626,943	+		SO4438	0.80	+2.2
4,626,943	+		SO4438	0.80	+0.4
4,626,943	+		SO4438	0.80	+0.5
4,626,943	+		SO4438	0.80	+0.6
4,626,946	+		SO4438	0.81	-2.3
4,626,951	-		SO4438	0.82	-0.9
4,626,951	-		SO4438	0.82	+0.5
4,626,951	-		SO4438	0.82	-1.8
4,626,954	+		SO4438	0.83	+1.4
4,626,954	-		SO4438	0.83	+0.5
4,626,954	-		SO4438	0.83	-0.4
4,626,959	+		SO4438	0.85	+1.3
4,626,959	+		SO4438	0.85	-1.5
4,626,966	+		SO4438	0.86	-1.7
4,626,966	+		SO4438	0.86	-0.8
4,626,966	+		SO4438	0.86	-0.2
4,626,967	-		SO4438	0.87	+1.0
4,626,967	-		SO4438	0.87	+0.1
4,626,967	-		SO4438	0.87	+2.1
4,626,969	-		SO4438	0.87	-2.9
4,627,126	-				+0.1
4,627,127	+				+0.7
4,627,127	+				+0.8
4,627,136	-				+2.3
4,627,136	-				+1.8
4,627,154	+				+0.3
4,627,154	+				+0.6
4,627,160	+				+0.1
4,627,169	-				-1.0
4,627,170	-				+0.5
4,627,184	+				-1.0
4,627,185	+				+2.6
4,627,185	+				+0.5
4,627,191	-				+0.3
4,627,192	-				-0.3
4,627,192	-				+1.8
4,627,193	-				-0.5
4,627,193	-				-0.0
4,627,203	+				+0.5
4,627,203	+				+1.5
4,627,211	-				-0.2
4,627,211	-				-0.0
4,627,228	+				-0.6
4,627,236	-				+3.1
4,627,275	+				-0.8
4,627,275	+				-0.8
4,627,283	-				+1.2
4,627,312	+				-3.4
4,627,322	+				+2.8
4,627,322	-				-0.5
4,627,324	+				-0.2
4,627,331	+				-0.6
4,627,331	+				+0.1
4,627,333	+				+0.1
4,627,335	+				-1.0
4,627,335	+				+2.1
4,627,339	-				+1.6
4,627,339	-				+0.8
4,627,341	-				-0.5
4,627,346	-				+2.0
4,627,359	+				+2.0
4,627,378	-		SO4439	0.10	-0.6
4,627,380	+		SO4439	0.10	-0.9
4,627,388	-		SO4439	0.11	+0.5
4,627,400	+		SO4439	0.11	-0.6
4,627,402	+		SO4439	0.11	-1.5
4,627,402	+		SO4439	0.11	+0.4
4,627,408	-		SO4439	0.12	-0.2
4,627,408	-		SO4439	0.12	-0.3
4,627,410	-		SO4439	0.12	-1.4
4,627,410	-		SO4439	0.12	+0.4
4,627,410	-		SO4439	0.12	+0.9
4,627,410	-		SO4439	0.12	-1.3
4,627,410	-		SO4439	0.12	-0.5
4,627,443	-		SO4439	0.13	-1.5
4,627,544	+		SO4439	0.17	+1.9
4,627,545	+		SO4439	0.17	-0.0
4,627,552	+		SO4439	0.17	-1.6
4,627,552	+		SO4439	0.17	+1.2
4,627,552	+		SO4439	0.17	-0.4
4,627,552	+		SO4439	0.17	-0.8
4,627,552	+		SO4439	0.17	+0.2
4,627,552	+		SO4439	0.17	-0.9
4,627,552	+		SO4439	0.17	-0.6
4,627,552	+		SO4439	0.17	+0.0
4,627,552	+		SO4439	0.17	+0.0
4,627,554	+		SO4439	0.18	-0.0
4,627,554	+		SO4439	0.18	+0.2
4,627,554	+		SO4439	0.18	-0.9
4,627,554	+		SO4439	0.18	-2.0
4,627,554	+		SO4439	0.18	-1.9
4,627,554	+		SO4439	0.18	+0.7
4,627,554	+		SO4439	0.18	+1.3
4,627,554	+		SO4439	0.18	-0.8
4,627,554	+		SO4439	0.18	+1.1
4,627,554	+		SO4439	0.18	-1.1
4,627,554	+		SO4439	0.18	+0.5
4,627,554	+		SO4439	0.18	+1.2
4,627,554	+		SO4439	0.18	+0.4
4,627,554	+		SO4439	0.18	+0.4
4,627,554	+		SO4439	0.18	-0.3
4,627,554	+		SO4439	0.18	-0.8
4,627,554	+		SO4439	0.18	-1.4
4,627,560	-		SO4439	0.18	+0.4
4,627,560	-		SO4439	0.18	-0.1
4,627,560	-		SO4439	0.18	-0.3
4,627,560	-		SO4439	0.18	-1.7
4,627,560	-		SO4439	0.18	-2.4
4,627,562	-		SO4439	0.18	-0.2
4,627,562	-		SO4439	0.18	+1.3
4,627,562	-		SO4439	0.18	-2.8
4,627,562	-		SO4439	0.18	+0.5
4,627,562	-		SO4439	0.18	-0.2
4,627,562	-		SO4439	0.18	+1.5
4,627,562	-		SO4439	0.18	-0.3
4,627,562	-		SO4439	0.18	-0.5
4,627,562	-		SO4439	0.18	-0.8
4,627,563	+		SO4439	0.18	-0.8
4,627,563	+		SO4439	0.18	-3.9
4,627,571	-		SO4439	0.18	+0.2
4,627,581	-		SO4439	0.19	+1.0
4,627,591	+		SO4439	0.19	-2.5
4,627,617	+		SO4439	0.20	-2.0
4,627,617	+		SO4439	0.20	-0.5
4,627,621	-		SO4439	0.20	+0.3
4,627,625	-		SO4439	0.20	+0.0
4,627,630	-		SO4439	0.21	-1.0
4,627,668	+		SO4439	0.22	-0.5
4,627,668	+		SO4439	0.22	-0.5
4,627,668	+		SO4439	0.22	-0.2
4,627,668	+		SO4439	0.22	-1.5
4,627,668	+		SO4439	0.22	-0.1
4,627,668	+		SO4439	0.22	-0.5
4,627,668	+		SO4439	0.22	+0.1
4,627,668	+		SO4439	0.22	+0.7
4,627,668	+		SO4439	0.22	+0.5
4,627,668	+		SO4439	0.22	+0.2
4,627,673	+				+1.5
4,627,673	+		SO4439	0.22	+1.0
4,627,675	-		SO4439	0.22	-0.5
4,627,675	-		SO4439	0.22	+0.5
4,627,676	-		SO4439	0.22	+2.1
4,627,676	-		SO4439	0.22	-1.5
4,627,676	-		SO4439	0.22	+0.2
4,627,680	+		SO4439	0.23	+0.6
4,627,680	+		SO4439	0.23	+1.3
4,627,680	+		SO4439	0.23	-1.0
4,627,680	+		SO4439	0.23	+1.0
4,627,680	+		SO4439	0.23	+0.7
4,627,680	+		SO4439	0.23	-0.5
4,627,680	+		SO4439	0.23	-0.6
4,627,680	+		SO4439	0.23	+0.3
4,627,681	-		SO4439	0.23	-0.0
4,627,688	-		SO4439	0.23	+1.9
4,627,688	-		SO4439	0.23	-1.2
4,627,690	+		SO4439	0.23	-0.8
4,627,690	+		SO4439	0.23	-0.3
4,627,690	+		SO4439	0.23	+0.7
4,627,690	+		SO4439	0.23	-1.0
4,627,690	+		SO4439	0.23	-0.5
4,627,690	+		SO4439	0.23	-1.0
4,627,690	+		SO4439	0.23	-1.1
4,627,690	+		SO4439	0.23	-0.9
4,627,696	+		SO4439	0.23	-2.2
4,627,697	+		SO4439	0.23	-0.3
4,627,698	-		SO4439	0.23	-2.0
4,627,698	-		SO4439	0.23	+0.2
4,627,698	-		SO4439	0.23	-0.5
4,627,737	-		SO4439	0.25	+0.5
4,627,747	+		SO4439	0.25	-1.5
4,627,747	+		SO4439	0.25	-0.0
4,627,747	-		SO4439	0.25	+0.4
4,627,755	-		SO4439	0.26	-0.8
4,627,755	-		SO4439	0.26	-1.8
4,627,755	-		SO4439	0.26	+0.4
4,627,783	-		SO4439	0.27	+1.1
4,627,814	+				+1.0
4,627,816	-		SO4439	0.28	+0.7
4,627,856	+		SO4439	0.30	+1.0
4,627,866	+		SO4439	0.30	-0.3
4,627,874	-		SO4439	0.30	-1.9
4,627,874	-		SO4439	0.30	-0.1
4,627,881	+		SO4439	0.31	+0.7
4,627,889	-		SO4439	0.31	+1.4
4,627,889	-		SO4439	0.31	-0.2
4,627,889	-		SO4439	0.31	-1.0
4,627,891	+		SO4439	0.31	+0.2
4,627,901	+		SO4439	0.32	+0.5
4,627,906	+		SO4439	0.32	-3.4
4,627,909	-		SO4439	0.32	+0.1
4,627,909	-		SO4439	0.32	-2.6
4,627,915	-		SO4439	0.32	-0.4
4,627,947	+		SO4439	0.33	+0.0
4,628,212	-		SO4439	0.44	-1.1
4,628,226	+		SO4439	0.45	-0.7
4,628,226	+		SO4439	0.45	+0.2
4,628,226	+		SO4439	0.45	-2.5
4,628,226	+		SO4439	0.45	-1.0
4,628,226	+		SO4439	0.45	+0.4
4,628,232	-		SO4439	0.45	-0.4
4,628,234	-		SO4439	0.45	-2.3
4,628,234	-		SO4439	0.45	-2.6
4,628,234	-		SO4439	0.45	+0.5
4,628,234	-		SO4439	0.45	+0.5
4,628,234	-		SO4439	0.45	+0.7
4,628,234	-		SO4439	0.45	-0.6
4,628,234	-		SO4439	0.45	+1.0
4,628,234	-		SO4439	0.45	+2.1
4,628,408	+		SO4439	0.52	-1.9
4,628,408	+		SO4439	0.52	+0.4
4,628,408	+		SO4439	0.52	-0.1
4,628,416	-		SO4439	0.52	-0.7
4,628,438	-		SO4439	0.53	-0.2
4,628,521	+		SO4439	0.57	-0.0
4,628,521	+		SO4439	0.57	-0.1
4,628,587	-		SO4439	0.59	+0.8
4,628,587	-		SO4439	0.59	-1.2
4,628,627	+		SO4439	0.61	-0.3
4,628,651	-		SO4439	0.62	+1.3
4,628,651	-		SO4439	0.62	+1.3
4,628,651	-		SO4439	0.62	-1.3
4,628,671	+		SO4439	0.63	-0.2
4,628,687	-		SO4439	0.63	+0.4
4,628,687	-		SO4439	0.63	+1.2
4,628,756	+		SO4439	0.66	-0.0
4,628,787	+		SO4439	0.67	+0.5
4,628,789	+		SO4439	0.68	-1.3
4,628,859	+		SO4439	0.70	-3.4
4,628,942	-		SO4439	0.74	+0.7
4,628,973	-		SO4439	0.75	+0.1
4,629,035	-		SO4439	0.78	-2.2
4,629,040	-		SO4439	0.78	-1.6
4,629,107	+		SO4439	0.80	+0.7
4,629,132	+		SO4439	0.81	-0.3
4,629,139	+		SO4439	0.82	+0.0
4,629,175	+		SO4439	0.83	+1.7
4,629,205	-		SO4439	0.84	-0.2
4,629,210	-		SO4439	0.85	-0.1
4,629,210	-		SO4439	0.85	-0.9
4,629,300	+		SO4439	0.88	+0.4
4,629,300	+		SO4439	0.88	+1.5
4,629,381	+				-1.7
4,629,389	-				+0.5
4,629,389	-				-0.2
4,629,389	-				+0.4
4,629,423	+				+0.0
4,629,448	+				-0.5
4,629,448	+				+0.4
4,629,448	+				-1.0
4,629,448	+				-0.6
4,629,456	+				-0.8
4,629,456	+				-0.1
4,629,456	+				+0.0
4,629,456	-				-0.3
4,629,456	-				+0.5
4,629,464	-				-2.8
4,629,464	-				-0.8
4,629,464	-				-0.0
4,629,464	-				+1.4
4,629,466	-				-0.4
4,629,466	-				+0.5
4,629,466	-				+0.5
4,629,466	-				-2.8
4,629,474	-				+0.4
4,629,482	+				+0.5
4,629,490	-				-2.2
4,629,493	+				+0.1
4,629,518	-				+0.3
4,629,547	+				+0.1
4,629,564	+				+0.7
4,629,564	+				-2.7
4,629,572	-				+1.0
4,629,572	-				+1.0
4,629,572	-				-1.6
4,629,574	+				-1.2
4,629,575	+				-2.3
4,629,604	+		SO4440	0.13	+0.8
4,629,612	-		SO4440	0.15	+1.0
4,629,620	+		SO4440	0.16	+0.2
4,629,620	+		SO4440	0.16	-2.2
4,629,638	+		SO4440	0.21	-0.1
4,629,638	-		SO4440	0.21	+0.1
4,629,646	-		SO4440	0.23	-1.3
4,629,675	+		SO4440	0.29	-2.0
4,629,675	+		SO4440	0.29	-0.7
4,629,675	+		SO4440	0.29	-0.0
4,629,675	+		SO4440	0.29	-0.3
4,629,675	+		SO4440	0.29	-1.2
4,629,675	+		SO4440	0.29	+0.4
4,629,675	+		SO4440	0.29	-0.6
4,629,675	+		SO4440	0.29	+0.7
4,629,675	+		SO4440	0.29	-0.5
4,629,678	-		SO4440	0.30	-1.6
4,629,683	-		SO4440	0.31	-0.8
4,629,683	-		SO4440	0.31	-0.8
4,629,683	-		SO4440	0.31	-1.5
4,629,724	+				-0.0
4,629,726	+		SO4440	0.41	-2.8
4,629,736	+		SO4440	0.44	-1.4
4,629,739	-		SO4440	0.44	-1.9
4,629,744	-		SO4440	0.46	-1.3
4,629,744	-		SO4440	0.46	+1.8
4,629,744	-		SO4440	0.46	-1.0
4,629,759	-		SO4440	0.49	-0.1
4,629,762	+		SO4440	0.50	-2.6
4,629,770	+		SO4440	0.52	+2.7
4,629,821	+		SO4440	0.64	-2.8
4,629,901	-		SO4440	0.82	+0.1
4,629,927	-		SO4440	0.88	-0.0
4,629,927	-		SO4440	0.88	+0.7
4,629,927	-		SO4440	0.88	+1.5
4,629,937	-				+0.9
4,629,937	-				+1.2
4,629,937	-				+0.8
4,629,937	-				+0.8
4,629,937	-				-0.4
4,629,937	-				+0.8
4,629,937	-				-1.5
4,629,937	-				+0.7
4,629,937	-				-0.2
4,629,937	-				+0.3
4,629,937	-				+1.5
4,629,937	-				+1.1
4,629,937	-				-0.8
4,629,937	-				+0.0
4,629,937	-				+1.6
4,629,937	-				+0.8
4,629,938	-				-0.4
4,629,942	-				-0.9