Strain Fitness in Shewanella oneidensis MR-1 around SO3247

Experiment: Ferric citrate electron acceptor; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; ground control
3,384,846	-	flgF	SO3245	0.17	-2.5
3,384,852	+	flgF	SO3245	0.18	+1.4
3,384,855	-	flgF	SO3245	0.18	-0.5
3,384,855	-	flgF	SO3245	0.18	-2.9
3,384,906	+	flgF	SO3245	0.25	-0.1
3,384,978	+	flgF	SO3245	0.35	-2.8
3,384,987	-	flgF	SO3245	0.36	-3.1
3,385,020	-	flgF	SO3245	0.40	+1.2
3,385,164	+	flgF	SO3245	0.60	-2.1
3,385,164	+	flgF	SO3245	0.60	-1.2
3,385,172	-	flgF	SO3245	0.61	-1.2
3,385,226	+	flgF	SO3245	0.68	-2.8
3,385,226	+	flgF	SO3245	0.68	-4.5
3,385,226	+	flgF	SO3245	0.68	-1.3
3,385,226	+	flgF	SO3245	0.68	+2.1
3,385,234	-	flgF	SO3245	0.69	-0.9
3,385,372	+	flgF	SO3245	0.88	-2.5
3,385,432	-				-1.1
3,385,587	+				+0.7
3,385,595	-				-1.8
3,385,677	+				-1.5
3,385,783	-	flgE	SO3247	0.11	-2.8
3,385,807	-	flgE	SO3247	0.13	-2.6
3,385,807	-	flgE	SO3247	0.13	-0.2
3,385,807	-	flgE	SO3247	0.13	-1.4
3,385,867	+	flgE	SO3247	0.17	-3.5
3,385,948	+	flgE	SO3247	0.23	-1.2
3,385,956	-	flgE	SO3247	0.23	-4.5
3,386,005	-	flgE	SO3247	0.27	-0.4
3,386,147	+	flgE	SO3247	0.38	-1.4
3,386,155	-	flgE	SO3247	0.38	-2.4
3,386,182	+	flgE	SO3247	0.40	-1.2
3,386,190	-	flgE	SO3247	0.41	-2.1
3,386,212	+	flgE	SO3247	0.42	-2.2
3,386,212	+	flgE	SO3247	0.42	-0.6
3,386,220	-	flgE	SO3247	0.43	-0.6
3,386,245	-	flgE	SO3247	0.45	-0.9
3,386,249	+	flgE	SO3247	0.45	-1.7
3,386,319	+	flgE	SO3247	0.50	-3.7
3,386,351	-	flgE	SO3247	0.52	-0.9
3,386,393	-	flgE	SO3247	0.56	-3.6
3,386,439	-	flgE	SO3247	0.59	+0.4
3,386,526	+	flgE	SO3247	0.65	-1.6
3,386,534	-	flgE	SO3247	0.66	-0.7
3,386,561	+	flgE	SO3247	0.68	-1.8
3,386,569	-	flgE	SO3247	0.69	+0.5
3,386,749	-	flgE	SO3247	0.82	-1.2
3,386,913	-				-1.2
3,386,952	-				-1.2
3,387,062	+				-0.9
3,387,070	-				+1.0
3,387,096	-				+0.6
3,387,106	-				-0.3
3,387,187	-	flgD	SO3248	0.16	-0.7
3,387,292	-	flgD	SO3248	0.30	-0.6
3,387,327	+	flgD	SO3248	0.34	-0.8
3,387,390	+	flgD	SO3248	0.43	-1.6
3,387,457	+	flgD	SO3248	0.51	-1.3
3,387,489	-	flgD	SO3248	0.56	-2.5
3,387,611	-	flgD	SO3248	0.72	-1.4
3,387,612	-	flgD	SO3248	0.72	+3.1
3,387,629	-	flgD	SO3248	0.74	-1.2
3,387,761	-				-1.1
3,387,823	-				-0.9
3,387,854	+				-1.8
3,387,906	-				-1.2
3,387,954	+	flgC	SO3249	0.20	+0.4