Experiment: Ferric citrate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mfd and SO2256 are separated by 86 nucleotides SO2256 and lolE are separated by 94 nucleotides lolE and lolD are separated by 98 nucleotides lolD and SO2259 overlap by 4 nucleotides
SO2255: mfd - transcription-repair coupling factor (NCBI ptt file), at 2,367,847 to 2,371,341
mfd
SO2256: SO2256 - conserved hypothetical protein (NCBI ptt file), at 2,371,428 to 2,372,048
SO2256
SO2257: lolE - lipoprotein releasing system transmembrane protein LolE (NCBI ptt file), at 2,372,143 to 2,373,375
lolE
SO2258: lolD - lipoprotein releasing system ATP-binding protein LolD (NCBI ptt file), at 2,373,474 to 2,374,166
lolD
SO2259: SO2259 - lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file), at 2,374,163 to 2,375,413
SO2259
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-2
-1
0
1 at 2371.161 kb on + strand at 2371.169 kb on - strand at 2371.224 kb on - strand at 2371.621 kb on - strand, within SO2256 at 2371.629 kb on - strand, within SO2256 at 2371.809 kb on - strand, within SO2256 at 2371.853 kb on - strand, within SO2256
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control remove 2,371,161 + -1.0 2,371,169 - -2.2 2,371,224 - -0.5 2,371,621 - SO2256 0.31 -2.4 2,371,629 - SO2256 0.32 +0.0 2,371,809 - SO2256 0.61 -1.3 2,371,853 - SO2256 0.68 -0.2
Or see this region's nucleotide sequence