Strain Fitness in Shewanella oneidensis MR-1 around SO1663

Experiment: Ferric citrate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1661 and SO1662 are separated by 335 nucleotidesSO1662 and napF are separated by 122 nucleotidesnapF and galE are separated by 76 nucleotides SO1661: SO1661 - transcriptional regulator, LysR family (NCBI ptt file), at 1,748,799 to 1,749,785 SO1661 SO1662: SO1662 - hypothetical Ccm2-related protein (NCBI ptt file), at 1,750,121 to 1,750,528 SO1662 SO1663: napF - ferredoxin-type protein NapF (NCBI ptt file), at 1,750,651 to 1,751,136 napF SO1664: galE - UDP-glucose 4-epimerase (NCBI ptt file), at 1,751,213 to 1,752,226 galE Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.675 kb on + strand, within SO1661at 1749.683 kb on - strand, within SO1661at 1749.806 kb on + strandat 1749.814 kb on - strandat 1749.819 kb on + strandat 1749.855 kb on - strandat 1749.878 kb on - strandat 1749.952 kb on - strandat 1749.952 kb on - strandat 1750.037 kb on + strandat 1750.110 kb on - strandat 1750.183 kb on - strand, within SO1662at 1750.318 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.397 kb on - strand, within SO1662at 1750.474 kb on + strand, within SO1662at 1750.496 kb on + strandat 1750.524 kb on + strandat 1750.625 kb on + strandat 1750.785 kb on + strand, within napFat 1750.837 kb on - strand, within napFat 1751.059 kb on + strand, within napFat 1751.280 kb on - strandat 1751.352 kb on + strand, within galEat 1751.364 kb on + strand, within galEat 1751.388 kb on + strand, within galEat 1751.388 kb on + strand, within galEat 1751.414 kb on - strand, within galEat 1751.440 kb on - strand, within galEat 1751.457 kb on - strand, within galEat 1751.493 kb on + strand, within galEat 1751.493 kb on + strand, within galEat 1751.501 kb on - strand, within galEat 1751.550 kb on - strand, within galEat 1751.663 kb on + strand, within galEat 1751.700 kb on - strand, within galEat 1751.700 kb on - strand, within galEat 1751.700 kb on - strand, within galEat 1751.908 kb on + strand, within galEat 1751.916 kb on - strand, within galEat 1751.916 kb on - strand, within galEat 1751.916 kb on - strand, within galEat 1752.101 kb on + strand, within galEat 1752.101 kb on + strand, within galEat 1752.109 kb on - strand, within galEat 1752.109 kb on - strand, within galE

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control
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1,749,675 + SO1661 0.89 -0.7
1,749,683 - SO1661 0.90 -0.5
1,749,806 + +0.1
1,749,814 - +2.4
1,749,819 + -1.8
1,749,855 - -0.2
1,749,878 - -0.7
1,749,952 - +1.0
1,749,952 - +0.7
1,750,037 + -2.4
1,750,110 - +1.4
1,750,183 - SO1662 0.15 +1.3
1,750,318 - SO1662 0.48 +0.6
1,750,397 - SO1662 0.68 +1.4
1,750,397 - SO1662 0.68 +1.1
1,750,397 - SO1662 0.68 +0.7
1,750,474 + SO1662 0.87 -2.0
1,750,496 + +0.0
1,750,524 + +0.6
1,750,625 + -1.9
1,750,785 + napF SO1663 0.28 -1.3
1,750,837 - napF SO1663 0.38 -0.8
1,751,059 + napF SO1663 0.84 -0.7
1,751,280 - +0.6
1,751,352 + galE SO1664 0.14 +0.2
1,751,364 + galE SO1664 0.15 +0.1
1,751,388 + galE SO1664 0.17 +0.6
1,751,388 + galE SO1664 0.17 +0.2
1,751,414 - galE SO1664 0.20 +0.6
1,751,440 - galE SO1664 0.22 +0.9
1,751,457 - galE SO1664 0.24 +1.3
1,751,493 + galE SO1664 0.28 +0.1
1,751,493 + galE SO1664 0.28 -0.2
1,751,501 - galE SO1664 0.28 -2.7
1,751,550 - galE SO1664 0.33 -0.4
1,751,663 + galE SO1664 0.44 -0.0
1,751,700 - galE SO1664 0.48 +0.2
1,751,700 - galE SO1664 0.48 +1.3
1,751,700 - galE SO1664 0.48 -0.3
1,751,908 + galE SO1664 0.69 -0.3
1,751,916 - galE SO1664 0.69 -0.7
1,751,916 - galE SO1664 0.69 +0.3
1,751,916 - galE SO1664 0.69 +0.1
1,752,101 + galE SO1664 0.88 -0.4
1,752,101 + galE SO1664 0.88 +0.7
1,752,109 - galE SO1664 0.88 +0.3
1,752,109 - galE SO1664 0.88 +2.0

Or see this region's nucleotide sequence