Strain Fitness in Shewanella oneidensis MR-1 around SO0676

Experiment: Ferric citrate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0674 and SO0675 overlap by 1 nucleotidesSO0675 and SO0676 are separated by 70 nucleotidesSO0676 and SO0677 are separated by 2 nucleotidesSO0677 and SO0678 overlap by 1 nucleotidesSO0678 and SO0679 are separated by 28 nucleotides SO0674: SO0674 - prophage MuSo1, protein Gp32, putative (NCBI ptt file), at 692,234 to 693,403 SO0674 SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323 SO0675 SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840 SO0676 SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283 SO0677 SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726 SO0678 SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501 SO0679 Position (kb) 694 695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 693.426 kb on + strandat 693.432 kb on - strandat 693.434 kb on - strandat 693.451 kb on - strandat 693.474 kb on + strandat 693.482 kb on - strandat 693.482 kb on - strandat 693.531 kb on + strand, within SO0675at 693.539 kb on - strand, within SO0675at 693.539 kb on - strand, within SO0675at 693.546 kb on - strand, within SO0675at 693.568 kb on + strand, within SO0675at 693.602 kb on + strand, within SO0675at 693.610 kb on + strand, within SO0675at 693.610 kb on - strand, within SO0675at 693.696 kb on + strand, within SO0675at 693.696 kb on + strand, within SO0675at 693.704 kb on - strand, within SO0675at 693.709 kb on + strand, within SO0675at 693.730 kb on + strand, within SO0675at 693.738 kb on - strand, within SO0675at 693.739 kb on - strand, within SO0675at 693.789 kb on + strand, within SO0675at 693.789 kb on + strand, within SO0675at 693.797 kb on - strand, within SO0675at 693.868 kb on - strand, within SO0675at 693.889 kb on - strand, within SO0675at 693.892 kb on + strand, within SO0675at 693.901 kb on + strand, within SO0675at 693.926 kb on - strand, within SO0675at 693.995 kb on - strand, within SO0675at 694.045 kb on - strand, within SO0675at 694.050 kb on - strand, within SO0675at 694.060 kb on + strand, within SO0675at 694.089 kb on - strand, within SO0675at 694.145 kb on - strand, within SO0675at 694.194 kb on - strand, within SO0675at 694.216 kb on - strand, within SO0675at 694.238 kb on + strandat 694.246 kb on - strandat 694.270 kb on + strandat 694.270 kb on - strandat 694.287 kb on + strandat 694.317 kb on - strandat 694.347 kb on - strandat 694.456 kb on + strand, within SO0676at 694.463 kb on + strand, within SO0676at 694.464 kb on - strand, within SO0676at 694.486 kb on - strand, within SO0676at 694.492 kb on - strand, within SO0676at 694.546 kb on + strand, within SO0676at 694.546 kb on + strand, within SO0676at 694.563 kb on + strand, within SO0676at 694.563 kb on + strand, within SO0676at 694.648 kb on + strand, within SO0676at 694.738 kb on + strand, within SO0676at 694.754 kb on + strand, within SO0676at 694.785 kb on - strand, within SO0676at 694.862 kb on - strandat 694.872 kb on - strandat 694.899 kb on + strand, within SO0677at 694.899 kb on + strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.909 kb on - strand, within SO0677at 694.921 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.266 kb on + strandat 695.280 kb on - strandat 695.322 kb on + strandat 695.322 kb on + strandat 695.330 kb on - strand, within SO0678at 695.330 kb on - strand, within SO0678at 695.406 kb on - strand, within SO0678at 695.406 kb on - strand, within SO0678at 695.459 kb on + strand, within SO0678at 695.499 kb on - strand, within SO0678at 695.501 kb on + strand, within SO0678at 695.509 kb on - strand, within SO0678at 695.509 kb on - strand, within SO0678at 695.514 kb on + strand, within SO0678at 695.561 kb on - strand, within SO0678at 695.591 kb on - strand, within SO0678at 695.602 kb on - strand, within SO0678at 695.636 kb on + strand, within SO0678at 695.636 kb on + strand, within SO0678at 695.644 kb on - strand, within SO0678at 695.677 kb on + strand, within SO0678at 695.678 kb on + strand, within SO0678

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control
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693,426 + +1.7
693,432 - -0.3
693,434 - -0.5
693,451 - +0.7
693,474 + -0.4
693,482 - +0.2
693,482 - +0.1
693,531 + SO0675 0.14 +2.6
693,539 - SO0675 0.15 +2.1
693,539 - SO0675 0.15 +1.8
693,546 - SO0675 0.16 +1.6
693,568 + SO0675 0.18 -1.0
693,602 + SO0675 0.22 -1.9
693,610 + SO0675 0.22 -1.4
693,610 - SO0675 0.22 +0.3
693,696 + SO0675 0.32 +2.7
693,696 + SO0675 0.32 -0.9
693,704 - SO0675 0.33 +1.0
693,709 + SO0675 0.33 +0.5
693,730 + SO0675 0.36 -1.3
693,738 - SO0675 0.36 +0.7
693,739 - SO0675 0.36 -1.6
693,789 + SO0675 0.42 +3.7
693,789 + SO0675 0.42 +0.5
693,797 - SO0675 0.43 -0.3
693,868 - SO0675 0.50 -1.2
693,889 - SO0675 0.53 -3.6
693,892 + SO0675 0.53 -2.3
693,901 + SO0675 0.54 -1.1
693,926 - SO0675 0.57 +0.4
693,995 - SO0675 0.64 -2.0
694,045 - SO0675 0.70 +0.1
694,050 - SO0675 0.70 -0.6
694,060 + SO0675 0.71 +0.4
694,089 - SO0675 0.74 +0.7
694,145 - SO0675 0.81 +1.7
694,194 - SO0675 0.86 -1.5
694,216 - SO0675 0.88 +0.5
694,238 + +0.3
694,246 - +0.4
694,270 + +0.6
694,270 - -2.4
694,287 + -1.0
694,317 - -2.0
694,347 - -0.4
694,456 + SO0676 0.14 -1.6
694,463 + SO0676 0.15 +1.3
694,464 - SO0676 0.16 -1.1
694,486 - SO0676 0.21 -1.0
694,492 - SO0676 0.22 +0.4
694,546 + SO0676 0.34 -0.9
694,546 + SO0676 0.34 -1.1
694,563 + SO0676 0.38 -0.2
694,563 + SO0676 0.38 -1.3
694,648 + SO0676 0.57 -0.8
694,738 + SO0676 0.77 +0.1
694,754 + SO0676 0.81 -0.2
694,785 - SO0676 0.87 +1.9
694,862 - -1.7
694,872 - +0.6
694,899 + SO0677 0.13 -2.5
694,899 + SO0677 0.13 +0.6
694,907 - SO0677 0.15 -2.1
694,907 - SO0677 0.15 +0.8
694,909 - SO0677 0.15 +0.7
694,921 + SO0677 0.18 -0.5
695,102 + SO0677 0.59 +2.2
695,102 + SO0677 0.59 +2.3
695,110 - SO0677 0.61 +1.2
695,110 - SO0677 0.61 +1.7
695,110 - SO0677 0.61 -0.5
695,157 + SO0677 0.71 +1.2
695,157 + SO0677 0.71 +0.4
695,182 - SO0677 0.77 -2.1
695,182 - SO0677 0.77 +0.4
695,266 + -2.6
695,280 - +3.0
695,322 + +0.4
695,322 + +3.2
695,330 - SO0678 0.11 +0.9
695,330 - SO0678 0.11 +0.7
695,406 - SO0678 0.28 +0.8
695,406 - SO0678 0.28 -1.3
695,459 + SO0678 0.40 -1.1
695,499 - SO0678 0.49 -0.4
695,501 + SO0678 0.49 -0.8
695,509 - SO0678 0.51 -0.0
695,509 - SO0678 0.51 +0.2
695,514 + SO0678 0.52 -0.6
695,561 - SO0678 0.63 -0.4
695,591 - SO0678 0.69 +0.9
695,602 - SO0678 0.72 -0.6
695,636 + SO0678 0.80 -0.6
695,636 + SO0678 0.80 +0.2
695,644 - SO0678 0.81 -0.7
695,677 + SO0678 0.89 -2.5
695,678 + SO0678 0.89 +0.2

Or see this region's nucleotide sequence