Strain Fitness in Shewanella oneidensis MR-1 around SO0028

Experiment: Ferric citrate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0026 and SO0027 are separated by 200 nucleotidesSO0027 and trkH-2 are separated by 41 nucleotidestrkH-2 and trkA are separated by 11 nucleotides SO0026: SO0026 - transcriptional regulator, ArsR family (NCBI ptt file), at 31,147 to 31,455 SO0026 SO0027: SO0027 - protoporphyrinogen oxidase, putative (NCBI ptt file), at 31,656 to 32,210 SO0027 SO0028: trkH-2 - potassium uptake protein TrkH (NCBI ptt file), at 32,252 to 33,694 trkH-2 SO0029: trkA - potassium uptake protein TrkA (NCBI ptt file), at 33,706 to 35,115 trkA Position (kb) 32 33 34Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 31.269 kb on + strand, within SO0026at 31.338 kb on - strand, within SO0026at 31.388 kb on + strand, within SO0026at 31.516 kb on + strandat 31.516 kb on + strandat 31.589 kb on + strandat 31.673 kb on + strandat 31.729 kb on + strand, within SO0027at 31.734 kb on + strand, within SO0027at 31.737 kb on - strand, within SO0027at 31.737 kb on - strand, within SO0027at 31.744 kb on + strand, within SO0027at 31.752 kb on - strand, within SO0027at 31.752 kb on - strand, within SO0027at 31.759 kb on - strand, within SO0027at 31.764 kb on + strand, within SO0027at 31.823 kb on + strand, within SO0027at 31.844 kb on - strand, within SO0027at 31.856 kb on - strand, within SO0027at 31.875 kb on + strand, within SO0027at 31.881 kb on + strand, within SO0027at 31.884 kb on + strand, within SO0027at 31.892 kb on - strand, within SO0027at 31.898 kb on - strand, within SO0027at 31.936 kb on + strand, within SO0027at 32.001 kb on + strand, within SO0027at 32.016 kb on + strand, within SO0027at 32.051 kb on + strand, within SO0027at 32.059 kb on - strand, within SO0027at 32.061 kb on + strand, within SO0027at 32.069 kb on - strand, within SO0027at 32.167 kb on - strandat 32.172 kb on + strandat 32.175 kb on + strandat 32.175 kb on + strandat 32.276 kb on + strandat 32.276 kb on + strandat 32.284 kb on - strandat 32.284 kb on - strandat 32.322 kb on + strandat 32.366 kb on - strandat 32.389 kb on + strandat 32.403 kb on - strand, within trkH-2at 32.403 kb on - strand, within trkH-2at 32.406 kb on + strand, within trkH-2at 32.406 kb on + strand, within trkH-2at 32.419 kb on - strand, within trkH-2at 32.450 kb on + strand, within trkH-2at 32.450 kb on + strand, within trkH-2at 32.450 kb on + strand, within trkH-2at 32.458 kb on - strand, within trkH-2at 32.458 kb on - strand, within trkH-2at 32.468 kb on - strand, within trkH-2at 32.478 kb on - strand, within trkH-2at 32.509 kb on + strand, within trkH-2at 32.509 kb on + strand, within trkH-2at 32.509 kb on + strand, within trkH-2at 32.509 kb on + strand, within trkH-2at 32.517 kb on - strand, within trkH-2at 32.517 kb on - strand, within trkH-2at 32.517 kb on - strand, within trkH-2at 32.517 kb on - strand, within trkH-2at 32.517 kb on - strand, within trkH-2at 32.552 kb on - strand, within trkH-2at 32.558 kb on - strand, within trkH-2at 32.655 kb on - strand, within trkH-2at 32.668 kb on + strand, within trkH-2at 32.730 kb on + strand, within trkH-2at 32.747 kb on + strand, within trkH-2at 32.798 kb on - strand, within trkH-2at 32.818 kb on + strand, within trkH-2at 32.890 kb on - strand, within trkH-2at 32.891 kb on - strand, within trkH-2at 32.891 kb on - strand, within trkH-2at 32.900 kb on + strand, within trkH-2at 32.908 kb on + strand, within trkH-2at 32.908 kb on - strand, within trkH-2at 32.935 kb on + strand, within trkH-2at 32.940 kb on + strand, within trkH-2at 32.948 kb on - strand, within trkH-2at 32.948 kb on - strand, within trkH-2at 32.950 kb on - strand, within trkH-2at 32.988 kb on - strand, within trkH-2at 33.068 kb on + strand, within trkH-2at 33.075 kb on + strand, within trkH-2at 33.083 kb on - strand, within trkH-2at 33.218 kb on - strand, within trkH-2at 33.235 kb on + strand, within trkH-2at 33.235 kb on + strand, within trkH-2at 33.243 kb on - strand, within trkH-2at 33.243 kb on - strand, within trkH-2at 33.243 kb on - strand, within trkH-2at 33.245 kb on + strand, within trkH-2at 33.283 kb on + strand, within trkH-2at 33.327 kb on + strand, within trkH-2at 33.366 kb on - strand, within trkH-2at 33.424 kb on + strand, within trkH-2at 33.424 kb on + strand, within trkH-2at 33.424 kb on + strand, within trkH-2at 33.432 kb on - strand, within trkH-2at 33.502 kb on + strand, within trkH-2at 33.523 kb on - strand, within trkH-2at 33.571 kb on + strandat 33.582 kb on - strandat 33.629 kb on + strandat 33.629 kb on + strandat 33.637 kb on - strandat 33.637 kb on - strandat 33.644 kb on - strandat 33.691 kb on + strandat 33.704 kb on - strandat 33.780 kb on - strandat 33.911 kb on - strand, within trkAat 33.913 kb on + strand, within trkAat 33.943 kb on + strand, within trkAat 34.621 kb on + strand, within trkA

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control
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31,269 + SO0026 0.39 -1.8
31,338 - SO0026 0.62 -3.0
31,388 + SO0026 0.78 -0.4
31,516 + -2.2
31,516 + -0.3
31,589 + +0.4
31,673 + +0.3
31,729 + SO0027 0.13 -1.0
31,734 + SO0027 0.14 -3.2
31,737 - SO0027 0.15 -0.3
31,737 - SO0027 0.15 +1.6
31,744 + SO0027 0.16 +0.4
31,752 - SO0027 0.17 -1.0
31,752 - SO0027 0.17 -0.2
31,759 - SO0027 0.19 +0.3
31,764 + SO0027 0.19 -1.4
31,823 + SO0027 0.30 +0.3
31,844 - SO0027 0.34 +1.6
31,856 - SO0027 0.36 -0.9
31,875 + SO0027 0.39 +0.4
31,881 + SO0027 0.41 +1.0
31,884 + SO0027 0.41 +0.4
31,892 - SO0027 0.43 +2.3
31,898 - SO0027 0.44 -0.0
31,936 + SO0027 0.50 +0.3
32,001 + SO0027 0.62 +0.8
32,016 + SO0027 0.65 -0.4
32,051 + SO0027 0.71 +0.6
32,059 - SO0027 0.73 -0.4
32,061 + SO0027 0.73 -0.7
32,069 - SO0027 0.74 +0.9
32,167 - -1.0
32,172 + +0.9
32,175 + -0.6
32,175 + -0.4
32,276 + -1.9
32,276 + -3.8
32,284 - -4.3
32,284 - -2.7
32,322 + -1.6
32,366 - -3.6
32,389 + -0.0
32,403 - trkH-2 SO0028 0.10 -3.5
32,403 - trkH-2 SO0028 0.10 -2.2
32,406 + trkH-2 SO0028 0.11 -4.8
32,406 + trkH-2 SO0028 0.11 -5.4
32,419 - trkH-2 SO0028 0.12 -3.7
32,450 + trkH-2 SO0028 0.14 -2.9
32,450 + trkH-2 SO0028 0.14 -1.7
32,450 + trkH-2 SO0028 0.14 -2.9
32,458 - trkH-2 SO0028 0.14 -2.1
32,458 - trkH-2 SO0028 0.14 -4.3
32,468 - trkH-2 SO0028 0.15 -5.7
32,478 - trkH-2 SO0028 0.16 +0.6
32,509 + trkH-2 SO0028 0.18 -4.8
32,509 + trkH-2 SO0028 0.18 -2.6
32,509 + trkH-2 SO0028 0.18 -3.3
32,509 + trkH-2 SO0028 0.18 -2.2
32,517 - trkH-2 SO0028 0.18 -3.8
32,517 - trkH-2 SO0028 0.18 -5.2
32,517 - trkH-2 SO0028 0.18 -4.7
32,517 - trkH-2 SO0028 0.18 -2.2
32,517 - trkH-2 SO0028 0.18 -0.0
32,552 - trkH-2 SO0028 0.21 -1.7
32,558 - trkH-2 SO0028 0.21 -5.4
32,655 - trkH-2 SO0028 0.28 -3.3
32,668 + trkH-2 SO0028 0.29 -4.2
32,730 + trkH-2 SO0028 0.33 -2.9
32,747 + trkH-2 SO0028 0.34 -3.7
32,798 - trkH-2 SO0028 0.38 -4.7
32,818 + trkH-2 SO0028 0.39 -2.2
32,890 - trkH-2 SO0028 0.44 -4.8
32,891 - trkH-2 SO0028 0.44 -0.7
32,891 - trkH-2 SO0028 0.44 -2.9
32,900 + trkH-2 SO0028 0.45 -0.7
32,908 + trkH-2 SO0028 0.45 -0.7
32,908 - trkH-2 SO0028 0.45 -1.0
32,935 + trkH-2 SO0028 0.47 -5.9
32,940 + trkH-2 SO0028 0.48 -4.6
32,948 - trkH-2 SO0028 0.48 -3.7
32,948 - trkH-2 SO0028 0.48 -1.2
32,950 - trkH-2 SO0028 0.48 -2.2
32,988 - trkH-2 SO0028 0.51 -2.7
33,068 + trkH-2 SO0028 0.57 -2.9
33,075 + trkH-2 SO0028 0.57 -2.3
33,083 - trkH-2 SO0028 0.58 -3.5
33,218 - trkH-2 SO0028 0.67 -1.0
33,235 + trkH-2 SO0028 0.68 -0.7
33,235 + trkH-2 SO0028 0.68 -2.9
33,243 - trkH-2 SO0028 0.69 -2.7
33,243 - trkH-2 SO0028 0.69 -2.1
33,243 - trkH-2 SO0028 0.69 -4.3
33,245 + trkH-2 SO0028 0.69 -4.2
33,283 + trkH-2 SO0028 0.71 -0.7
33,327 + trkH-2 SO0028 0.74 -3.7
33,366 - trkH-2 SO0028 0.77 -3.2
33,424 + trkH-2 SO0028 0.81 +1.6
33,424 + trkH-2 SO0028 0.81 -3.4
33,424 + trkH-2 SO0028 0.81 -3.6
33,432 - trkH-2 SO0028 0.82 -0.4
33,502 + trkH-2 SO0028 0.87 -4.4
33,523 - trkH-2 SO0028 0.88 -3.2
33,571 + -3.2
33,582 - -2.4
33,629 + -3.4
33,629 + -2.6
33,637 - -3.0
33,637 - -3.4
33,644 - -2.3
33,691 + -1.0
33,704 - -0.2
33,780 - -0.4
33,911 - trkA SO0029 0.15 +0.6
33,913 + trkA SO0029 0.15 +0.6
33,943 + trkA SO0029 0.17 +1.6
34,621 + trkA SO0029 0.65 -0.7

Or see this region's nucleotide sequence