Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16715 and BWI76_RS16720 are separated by 725 nucleotides BWI76_RS16720 and BWI76_RS16725 are separated by 92 nucleotides
BWI76_RS16715: BWI76_RS16715 - hypothetical protein, at 3,460,760 to 3,461,668
_RS16715
BWI76_RS16720: BWI76_RS16720 - hypothetical protein, at 3,462,394 to 3,463,731
_RS16720
BWI76_RS16725: BWI76_RS16725 - Na+/H+ antiporter NhaC-like protein, at 3,463,824 to 3,465,242
_RS16725
Position (kb) 3462
3463
3464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3461.398 kb on - strand, within BWI76_RS16715 at 3461.398 kb on - strand, within BWI76_RS16715 at 3461.442 kb on + strand, within BWI76_RS16715 at 3461.482 kb on - strand, within BWI76_RS16715 at 3461.497 kb on - strand, within BWI76_RS16715 at 3461.512 kb on - strand, within BWI76_RS16715 at 3461.562 kb on - strand, within BWI76_RS16715 at 3461.604 kb on - strand at 3461.655 kb on - strand at 3461.655 kb on - strand at 3461.673 kb on - strand at 3461.738 kb on - strand at 3461.868 kb on - strand at 3461.883 kb on + strand at 3461.883 kb on + strand at 3461.883 kb on + strand at 3461.883 kb on + strand at 3461.918 kb on - strand at 3461.923 kb on - strand at 3461.930 kb on + strand at 3462.033 kb on + strand at 3462.083 kb on + strand at 3462.306 kb on - strand at 3462.322 kb on + strand at 3462.498 kb on + strand at 3462.621 kb on + strand, within BWI76_RS16720 at 3462.629 kb on - strand, within BWI76_RS16720 at 3462.681 kb on + strand, within BWI76_RS16720 at 3462.731 kb on - strand, within BWI76_RS16720 at 3463.089 kb on - strand, within BWI76_RS16720 at 3463.421 kb on + strand, within BWI76_RS16720 at 3463.659 kb on - strand at 3463.726 kb on + strand at 3463.769 kb on - strand at 3463.877 kb on + strand at 3464.053 kb on - strand, within BWI76_RS16725 at 3464.184 kb on - strand, within BWI76_RS16725 at 3464.201 kb on - strand, within BWI76_RS16725 at 3464.274 kb on + strand, within BWI76_RS16725 at 3464.282 kb on + strand, within BWI76_RS16725 at 3464.365 kb on - strand, within BWI76_RS16725 at 3464.372 kb on + strand, within BWI76_RS16725 at 3464.397 kb on - strand, within BWI76_RS16725 at 3464.399 kb on + strand, within BWI76_RS16725 at 3464.440 kb on - strand, within BWI76_RS16725 at 3464.472 kb on - strand, within BWI76_RS16725 at 3464.526 kb on - strand, within BWI76_RS16725 at 3464.528 kb on - strand, within BWI76_RS16725 at 3464.700 kb on - strand, within BWI76_RS16725
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,461,398 - BWI76_RS16715 0.70 +0.5 3,461,398 - BWI76_RS16715 0.70 -0.9 3,461,442 + BWI76_RS16715 0.75 -0.3 3,461,482 - BWI76_RS16715 0.79 +0.8 3,461,497 - BWI76_RS16715 0.81 +2.2 3,461,512 - BWI76_RS16715 0.83 +0.3 3,461,562 - BWI76_RS16715 0.88 -0.5 3,461,604 - -0.3 3,461,655 - -1.1 3,461,655 - -0.7 3,461,673 - +1.0 3,461,738 - +0.9 3,461,868 - +0.6 3,461,883 + +0.7 3,461,883 + +0.3 3,461,883 + +0.1 3,461,883 + +0.2 3,461,918 - +0.5 3,461,923 - -0.9 3,461,930 + +0.4 3,462,033 + +1.0 3,462,083 + +0.1 3,462,306 - +0.8 3,462,322 + -0.2 3,462,498 + +0.6 3,462,621 + BWI76_RS16720 0.17 -1.6 3,462,629 - BWI76_RS16720 0.18 -1.0 3,462,681 + BWI76_RS16720 0.21 -3.4 3,462,731 - BWI76_RS16720 0.25 -2.4 3,463,089 - BWI76_RS16720 0.52 -3.0 3,463,421 + BWI76_RS16720 0.77 +0.9 3,463,659 - -0.0 3,463,726 + -0.7 3,463,769 - -2.4 3,463,877 + +0.1 3,464,053 - BWI76_RS16725 0.16 -1.0 3,464,184 - BWI76_RS16725 0.25 +0.2 3,464,201 - BWI76_RS16725 0.27 -0.9 3,464,274 + BWI76_RS16725 0.32 +0.3 3,464,282 + BWI76_RS16725 0.32 +0.2 3,464,365 - BWI76_RS16725 0.38 +0.1 3,464,372 + BWI76_RS16725 0.39 -0.3 3,464,397 - BWI76_RS16725 0.40 -2.4 3,464,399 + BWI76_RS16725 0.41 -0.2 3,464,440 - BWI76_RS16725 0.43 +0.9 3,464,472 - BWI76_RS16725 0.46 -1.7 3,464,526 - BWI76_RS16725 0.49 +0.6 3,464,528 - BWI76_RS16725 0.50 -0.5 3,464,700 - BWI76_RS16725 0.62 -0.3
Or see this region's nucleotide sequence