Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08305

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
1,857,817	+		PFLU_RS08300	0.13	+1.2
1,857,817	+		PFLU_RS08300	0.13	+0.1
1,857,818	-		PFLU_RS08300	0.13	-2.3
1,857,818	-		PFLU_RS08300	0.13	+0.7
1,857,818	-		PFLU_RS08300	0.13	+1.3
1,857,830	+		PFLU_RS08300	0.14	-0.0
1,857,831	-		PFLU_RS08300	0.14	+1.5
1,857,831	-		PFLU_RS08300	0.14	-0.2
1,857,831	-		PFLU_RS08300	0.14	+0.2
1,857,831	-		PFLU_RS08300	0.14	-1.8
1,857,831	-		PFLU_RS08300	0.14	-1.3
1,857,887	+		PFLU_RS08300	0.21	-1.2
1,857,887	+		PFLU_RS08300	0.21	-1.8
1,857,887	+		PFLU_RS08300	0.21	-1.4
1,857,987	+		PFLU_RS08300	0.34	+1.0
1,857,987	+		PFLU_RS08300	0.34	+0.2
1,857,988	-		PFLU_RS08300	0.34	+0.1
1,857,988	-		PFLU_RS08300	0.34	+1.6
1,857,988	-		PFLU_RS08300	0.34	-1.9
1,857,988	-		PFLU_RS08300	0.34	+2.3
1,857,988	-		PFLU_RS08300	0.34	+1.5
1,858,013	+		PFLU_RS08300	0.37	-2.1
1,858,014	-		PFLU_RS08300	0.37	-1.3
1,858,014	-		PFLU_RS08300	0.37	-0.3
1,858,014	-		PFLU_RS08300	0.37	-1.3
1,858,366	+		PFLU_RS08300	0.81	+1.3
1,858,366	+		PFLU_RS08300	0.81	+1.7
1,858,366	+		PFLU_RS08300	0.81	-0.5
1,858,366	+		PFLU_RS08300	0.81	+0.1
1,858,367	-		PFLU_RS08300	0.81	-0.8
1,858,367	-		PFLU_RS08300	0.81	-1.2
1,858,367	-		PFLU_RS08300	0.81	-1.2
1,858,367	-		PFLU_RS08300	0.81	+2.0
1,858,367	-		PFLU_RS08300	0.81	+1.3
1,858,367	-		PFLU_RS08300	0.81	-0.3
1,858,367	-		PFLU_RS08300	0.81	+0.8
1,858,367	-		PFLU_RS08300	0.81	-0.8
1,858,367	-		PFLU_RS08300	0.81	+0.8
1,858,367	-		PFLU_RS08300	0.81	-2.7
1,858,417	+		PFLU_RS08300	0.87	+0.8
1,858,418	-		PFLU_RS08300	0.87	+2.3
1,858,442	+				-1.4
1,858,443	-				-1.7
1,858,443	-				+1.2
1,858,443	-				-2.8
1,858,527	+				+1.6
1,858,527	+				+1.4
1,858,527	+				-0.1
1,858,528	-				+1.0
1,858,528	-				-2.1
1,858,528	-				-1.5
1,858,528	-				-0.7
1,858,552	+				+2.6
1,858,553	-				+0.4
1,858,553	-				-2.5
1,858,588	+				-1.1
1,858,589	-				-1.5
1,858,598	+				-1.6
1,858,598	+				-1.7
1,858,600	+				-2.7
1,858,600	+				-2.0
1,858,600	+				-1.2
1,858,600	+				+4.4
1,858,601	-				-1.5
1,858,601	-				+1.3
1,858,601	-				-0.1
1,858,683	+				-3.0
1,858,684	-				+3.1
1,858,684	-				+0.6
1,858,684	-				-1.9
1,858,738	+				-2.7
1,858,738	+				+1.3
1,858,739	-				-2.2
1,858,780	+				+1.6
1,858,780	+				+2.7
1,858,780	+				+2.3
1,858,780	+				-2.5
1,858,780	+				-0.5
1,858,780	+				+1.7
1,858,780	+				-1.7
1,858,780	+				+0.5
1,858,780	+				+0.7
1,858,780	+				-1.8
1,858,780	+				+1.5
1,858,780	+				+0.2
1,858,780	+				-0.8
1,858,780	+				+3.4
1,858,780	+				+2.2
1,858,780	+				+1.2
1,858,780	+				+1.3
1,858,780	+				+0.1
1,858,780	+				-1.9
1,858,780	+				-0.5
1,858,780	+				+0.3
1,858,780	+				-0.7
1,858,780	+				+2.3
1,858,780	+				+0.8
1,858,780	+				+1.1
1,858,780	+				+0.1
1,858,780	+				+2.3
1,858,781	+				-1.5
1,858,781	-				-0.6
1,858,781	-				+2.0
1,858,781	-				+1.3
1,858,781	-				+1.9
1,858,781	-				+1.3
1,858,781	-				+2.8
1,858,781	-				+2.3
1,858,781	-				+1.4
1,858,781	-				+1.9
1,858,781	-				+0.6
1,858,781	-				-0.5
1,858,781	-				+2.2
1,858,781	-				+0.3
1,858,781	-				+3.5
1,858,781	-				-2.7
1,858,781	-				+3.5
1,858,781	-				-0.0
1,858,781	-				-0.3
1,858,781	-				-1.8
1,858,781	-				+0.7
1,858,781	-				+1.1
1,858,781	-				-0.2
1,858,781	-				+1.0
1,858,797	+				-1.6
1,858,968	-		PFLU_RS08305	0.15	-0.0
1,858,968	-		PFLU_RS08305	0.15	+2.4
1,858,994	+		PFLU_RS08305	0.17	-0.5
1,858,994	+		PFLU_RS08305	0.17	-2.7
1,858,994	+		PFLU_RS08305	0.17	-0.5
1,858,994	+		PFLU_RS08305	0.17	-2.2
1,858,994	+		PFLU_RS08305	0.17	-0.9
1,858,995	-		PFLU_RS08305	0.17	+0.5
1,858,995	-		PFLU_RS08305	0.17	+2.8
1,858,995	-		PFLU_RS08305	0.17	+1.1
1,858,995	-		PFLU_RS08305	0.17	+0.7
1,858,995	-		PFLU_RS08305	0.17	-0.8
1,858,995	-		PFLU_RS08305	0.17	-0.3
1,858,995	-		PFLU_RS08305	0.17	-0.0
1,858,995	-		PFLU_RS08305	0.17	+0.4
1,858,995	-		PFLU_RS08305	0.17	-0.5
1,858,995	-		PFLU_RS08305	0.17	-2.8
1,859,187	+		PFLU_RS08305	0.30	-1.8
1,859,187	+		PFLU_RS08305	0.30	-1.6
1,859,239	+		PFLU_RS08305	0.34	-1.3
1,859,239	+		PFLU_RS08305	0.34	-1.9
1,859,239	+		PFLU_RS08305	0.34	+1.5
1,859,239	+		PFLU_RS08305	0.34	-0.6
1,859,239	+		PFLU_RS08305	0.34	-0.5
1,859,239	+		PFLU_RS08305	0.34	-0.0
1,859,239	+		PFLU_RS08305	0.34	-2.3
1,859,240	-		PFLU_RS08305	0.34	-1.5
1,859,240	-		PFLU_RS08305	0.34	-2.1
1,859,240	-		PFLU_RS08305	0.34	+1.8
1,859,240	-		PFLU_RS08305	0.34	+1.2
1,859,240	-		PFLU_RS08305	0.34	-0.2
1,859,240	-		PFLU_RS08305	0.34	+1.8
1,859,404	+		PFLU_RS08305	0.45	-2.5
1,859,404	+		PFLU_RS08305	0.45	-1.7
1,859,404	+		PFLU_RS08305	0.45	-1.2
1,859,404	+		PFLU_RS08305	0.45	-1.2
1,859,404	+		PFLU_RS08305	0.45	-1.7
1,859,405	-		PFLU_RS08305	0.46	-2.7
1,859,405	-		PFLU_RS08305	0.46	-1.9
1,859,405	-		PFLU_RS08305	0.46	-0.1
1,859,405	-		PFLU_RS08305	0.46	-1.4
1,859,405	-		PFLU_RS08305	0.46	-1.5
1,859,405	-		PFLU_RS08305	0.46	-1.0
1,859,498	+		PFLU_RS08305	0.52	-2.1
1,859,498	+		PFLU_RS08305	0.52	+1.2
1,859,499	-		PFLU_RS08305	0.52	-1.0
1,859,561	+		PFLU_RS08305	0.57	+1.4
1,859,561	+		PFLU_RS08305	0.57	-1.6
1,859,561	+		PFLU_RS08305	0.57	+3.7
1,859,561	+		PFLU_RS08305	0.57	+1.7
1,859,561	+		PFLU_RS08305	0.57	+0.0
1,859,562	-		PFLU_RS08305	0.57	-0.9
1,859,562	-		PFLU_RS08305	0.57	+1.8
1,859,562	-		PFLU_RS08305	0.57	+1.1
1,859,599	+		PFLU_RS08305	0.59	-1.8
1,859,599	+		PFLU_RS08305	0.59	+1.0
1,859,599	+		PFLU_RS08305	0.59	-0.9
1,859,599	+		PFLU_RS08305	0.59	-2.7
1,859,600	-		PFLU_RS08305	0.59	-2.9
1,859,600	-		PFLU_RS08305	0.59	-0.7
1,859,600	-		PFLU_RS08305	0.59	-2.0
1,859,600	-		PFLU_RS08305	0.59	-0.9
1,859,600	-		PFLU_RS08305	0.59	+0.3
1,859,603	+		PFLU_RS08305	0.59	-0.5
1,859,603	+		PFLU_RS08305	0.59	-1.9
1,859,603	+		PFLU_RS08305	0.59	+2.8
1,859,603	+		PFLU_RS08305	0.59	+0.9
1,859,603	+		PFLU_RS08305	0.59	-0.6
1,859,604	-		PFLU_RS08305	0.60	+1.9
1,859,604	-		PFLU_RS08305	0.60	-1.3
1,859,604	-		PFLU_RS08305	0.60	+0.7
1,859,604	-		PFLU_RS08305	0.60	+2.4
1,859,604	-		PFLU_RS08305	0.60	+3.0
1,859,604	-		PFLU_RS08305	0.60	+1.3
1,859,604	-		PFLU_RS08305	0.60	-1.7
1,859,604	-		PFLU_RS08305	0.60	-1.7
1,859,604	-		PFLU_RS08305	0.60	+1.7
1,859,615	+		PFLU_RS08305	0.60	-0.9
1,859,876	+		PFLU_RS08305	0.79	+3.2
1,859,877	-		PFLU_RS08305	0.79	-1.3
1,859,957	+		PFLU_RS08305	0.84	+1.9
1,859,957	+		PFLU_RS08305	0.84	+0.3
1,859,957	+		PFLU_RS08305	0.84	+1.7
1,859,957	+		PFLU_RS08305	0.84	+2.3
1,859,957	+		PFLU_RS08305	0.84	-1.2
1,859,958	-		PFLU_RS08305	0.84	-2.5
1,859,958	-		PFLU_RS08305	0.84	-1.3
1,859,958	-		PFLU_RS08305	0.84	+0.2
1,859,958	-		PFLU_RS08305	0.84	-0.0
1,860,051	+				-0.4
1,860,051	+				+1.2
1,860,051	+				-0.0
1,860,051	+				-1.0
1,860,051	+				+1.4
1,860,051	+				-0.9
1,860,066	+				+2.2
1,860,066	+				+1.6
1,860,066	+				-2.4
1,860,067	-				-0.2
1,860,067	-				-3.0
1,860,067	-				-1.6
1,860,086	+				+1.9
1,860,086	+				-0.7
1,860,086	+				+0.7
1,860,086	+				+2.4
1,860,086	+				-1.8
1,860,086	+				-1.8
1,860,086	+				-1.8
1,860,086	+				-1.3
1,860,086	+				+0.7
1,860,086	+				-1.8
1,860,086	+				-0.3
1,860,086	+				-0.4
1,860,086	+				-0.6
1,860,087	-				+1.0
1,860,087	-				+0.8
1,860,087	-				+2.5
1,860,087	-				+2.5
1,860,087	-				+2.8
1,860,087	-				-0.7
1,860,091	+				-0.2
1,860,091	+				+1.2
1,860,091	+				+1.1
1,860,091	+				+0.6
1,860,091	+				+1.0
1,860,091	+				-1.0
1,860,091	+				+2.0
1,860,091	+				+1.0
1,860,091	+				+1.8
1,860,091	+				-0.5
1,860,091	+				+0.4
1,860,092	-				-1.5
1,860,092	-				-1.5
1,860,092	-				+1.6
1,860,092	-				-1.7
1,860,092	-				+1.2
1,860,092	-				-0.0
1,860,092	-				-0.2
1,860,092	-				-2.4
1,860,092	-				+1.1
1,860,092	-				-1.5
1,860,092	-				+1.0
1,860,092	-				-1.9
1,860,092	-				+6.2
1,860,092	-				+1.8
1,860,094	+				+0.7
1,860,094	+				+1.8
1,860,094	+				+1.8
1,860,094	+				-2.6
1,860,095	-				+0.3
1,860,095	-				-1.4
1,860,095	-				+1.0
1,860,095	-				+2.2
1,860,095	-				-0.9
1,860,107	+				-1.8
1,860,107	+				+0.7
1,860,107	+				+3.1
1,860,107	+				+1.1
1,860,107	+				-2.9
1,860,107	+				-1.4
1,860,107	+				+0.5
1,860,108	-				+0.8
1,860,108	-				+0.8
1,860,108	-				-0.8
1,860,108	-				+0.0
1,860,108	-				-1.8
1,860,108	-				-0.9
1,860,108	-				+0.3
1,860,108	-				-1.0
1,860,108	-				-1.3
1,860,108	-				+1.6
1,860,108	-				+0.4
1,860,108	-				-2.7
1,860,110	+				-1.9
1,860,110	+				-0.7
1,860,110	+				-1.2
1,860,111	-				-0.2
1,860,111	-				+1.0
1,860,111	-				+1.2
1,860,111	-				+1.0
1,860,111	-				+3.3
1,860,111	-				-0.7
1,860,111	-				-1.9
1,860,111	-				+0.8
1,860,111	-				-0.5
1,860,184	+				-2.1
1,860,237	+				-2.2
1,860,240	+				+2.1
1,860,240	+				-1.9
1,860,243	-				-2.4
1,860,260	+				-1.3
1,860,260	+				-2.2
1,860,260	+				-0.7
1,860,260	+				-2.9
1,860,260	+				-1.4
1,860,260	+				-1.6
1,860,260	+				+0.7
1,860,260	+				-2.9
1,860,260	+				+1.3
1,860,260	+				-1.0
1,860,260	+				-1.5
1,860,260	+				+1.2
1,860,260	+				+0.8
1,860,261	-				+1.2
1,860,261	-				+0.7
1,860,261	-				+0.1
1,860,261	-				+0.2
1,860,261	-				+1.3
1,860,261	-				-0.2
1,860,261	-				+1.6
1,860,261	-				-0.0
1,860,261	-				+0.7
1,860,261	-				+1.4
1,860,264	+				-1.4
1,860,264	+				-1.4
1,860,264	+				-0.5
1,860,264	+				-1.9
1,860,264	+				+1.7
1,860,265	-				-1.5
1,860,265	-				+2.0
1,860,276	-				+2.8
1,860,344	+		PFLU_RS08310	0.14	+1.5
1,860,344	+		PFLU_RS08310	0.14	-0.0
1,860,344	+		PFLU_RS08310	0.14	+1.4
1,860,344	+		PFLU_RS08310	0.14	-0.5
1,860,344	+		PFLU_RS08310	0.14	-3.3
1,860,345	-		PFLU_RS08310	0.14	+1.0
1,860,345	-		PFLU_RS08310	0.14	-1.0
1,860,345	-		PFLU_RS08310	0.14	+0.7
1,860,345	-		PFLU_RS08310	0.14	-1.1
1,860,345	-		PFLU_RS08310	0.14	+0.3
1,860,557	+		PFLU_RS08310	0.63	-0.3
1,860,557	+		PFLU_RS08310	0.63	+0.9
1,860,557	+		PFLU_RS08310	0.63	-1.9
1,860,558	-		PFLU_RS08310	0.63	-1.3
1,860,558	-		PFLU_RS08310	0.63	+0.3
1,860,590	+		PFLU_RS08310	0.71	+0.8
1,860,590	+		PFLU_RS08310	0.71	+1.0
1,860,591	-		PFLU_RS08310	0.71	-0.7
1,860,615	-		PFLU_RS08310	0.77	-0.7
1,860,615	-		PFLU_RS08310	0.77	+2.5
1,860,624	+		PFLU_RS08310	0.79	-2.2
1,860,625	-		PFLU_RS08310	0.79	+1.0
1,860,625	-		PFLU_RS08310	0.79	+1.0
1,860,801	+				-1.5
1,860,802	-				+2.3
1,860,802	-				-1.0
1,860,826	-				-0.8
1,860,833	+				+0.4
1,860,833	+				-1.9
1,860,833	+				+0.9
1,860,833	+				-1.4
1,860,833	+				+1.3
1,860,833	+				+0.4
1,860,833	+				+1.9
1,860,833	+				-1.5
1,860,833	+				+2.3
1,860,833	+				-0.9
1,860,833	+				+0.7
1,860,834	-				+3.4
1,860,834	-				-2.2
1,860,834	-				-0.7
1,860,834	-				+2.4
1,860,834	-				-2.2
1,860,834	-				+2.0
1,860,834	-				+2.0
1,860,903	+				-0.0
1,860,977	+				-1.0
1,860,990	-				-0.3