Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05865

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
1,314,457	+		PFLU_RS05850	0.72	+2.1
1,314,457	+		PFLU_RS05850	0.72	-2.1
1,314,458	-		PFLU_RS05850	0.73	+0.8
1,314,458	-		PFLU_RS05850	0.73	-1.8
1,314,627	-		PFLU_RS05850	0.87	+2.0
1,314,802	+				+0.3
1,314,830	+		PFLU_RS05855	0.15	-1.6
1,314,831	-		PFLU_RS05855	0.15	-2.1
1,314,889	+		PFLU_RS05855	0.30	-0.9
1,314,890	-		PFLU_RS05855	0.30	-0.2
1,314,931	+		PFLU_RS05855	0.41	-1.3
1,314,932	-		PFLU_RS05855	0.41	+1.3
1,314,932	-		PFLU_RS05855	0.41	+0.5
1,314,932	-		PFLU_RS05855	0.41	-0.6
1,314,932	-		PFLU_RS05855	0.41	+1.4
1,314,932	-		PFLU_RS05855	0.41	-0.5
1,314,953	+		PFLU_RS05855	0.47	-1.7
1,314,953	+		PFLU_RS05855	0.47	-1.2
1,314,953	+		PFLU_RS05855	0.47	-1.1
1,314,953	+		PFLU_RS05855	0.47	-1.2
1,314,953	+		PFLU_RS05855	0.47	-0.4
1,314,953	+		PFLU_RS05855	0.47	-1.7
1,314,953	+		PFLU_RS05855	0.47	+1.5
1,314,953	+		PFLU_RS05855	0.47	+1.1
1,314,953	+		PFLU_RS05855	0.47	+0.9
1,314,954	-		PFLU_RS05855	0.47	-1.5
1,314,954	-		PFLU_RS05855	0.47	-1.8
1,314,954	-		PFLU_RS05855	0.47	+0.6
1,314,954	-		PFLU_RS05855	0.47	-1.3
1,314,954	-		PFLU_RS05855	0.47	-0.4
1,314,954	-		PFLU_RS05855	0.47	-1.3
1,314,954	-		PFLU_RS05855	0.47	+1.5
1,314,954	-		PFLU_RS05855	0.47	+0.2
1,314,954	-		PFLU_RS05855	0.47	+1.8
1,314,954	-		PFLU_RS05855	0.47	+0.8
1,314,954	-		PFLU_RS05855	0.47	+3.8
1,314,964	+		PFLU_RS05855	0.50	+0.8
1,314,965	-		PFLU_RS05855	0.50	+0.1
1,314,965	-		PFLU_RS05855	0.50	-1.3
1,314,965	-		PFLU_RS05855	0.50	+0.8
1,315,154	+				-1.6
1,315,154	+				+0.8
1,315,154	+				-1.0
1,315,154	+				+2.9
1,315,155	-				+0.4
1,315,155	-				-2.4
1,315,155	-				+2.2
1,315,155	-				+2.2
1,315,166	+				-1.4
1,315,166	+				-0.9
1,315,166	+				-0.2
1,315,270	-		PFLU_RS05860	0.57	-0.9
1,315,370	+				+2.5
1,315,386	-				+2.6
1,315,386	-				+0.2
1,315,404	+				+0.2
1,315,405	-				-2.0
1,315,405	-				+3.7
1,315,471	+				-0.9
1,315,471	+				+0.9
1,315,471	+				-0.8
1,315,471	+				-1.1
1,315,472	-		PFLU_RS05865	0.10	-1.7
1,315,472	-		PFLU_RS05865	0.10	+1.1
1,315,472	-		PFLU_RS05865	0.10	+4.1
1,315,472	-		PFLU_RS05865	0.10	-1.3
1,315,472	-		PFLU_RS05865	0.10	-1.1
1,315,560	+		PFLU_RS05865	0.19	-0.4
1,315,580	-		PFLU_RS05865	0.21	+1.8
1,315,580	-		PFLU_RS05865	0.21	-1.2
1,315,710	+		PFLU_RS05865	0.34	-1.4
1,315,710	+		PFLU_RS05865	0.34	-0.2
1,315,711	-		PFLU_RS05865	0.34	+0.8
1,315,718	+		PFLU_RS05865	0.34	-1.6
1,315,719	-		PFLU_RS05865	0.34	+1.6
1,315,845	-		PFLU_RS05865	0.47	+3.1
1,315,867	-		PFLU_RS05865	0.49	+0.4
1,315,867	-		PFLU_RS05865	0.49	-0.7
1,315,868	+		PFLU_RS05865	0.49	+1.6
1,315,868	+		PFLU_RS05865	0.49	+1.3
1,315,868	+		PFLU_RS05865	0.49	+1.0
1,315,869	-		PFLU_RS05865	0.49	+0.9
1,315,899	+		PFLU_RS05865	0.52	+0.1
1,315,899	+		PFLU_RS05865	0.52	-0.2
1,315,899	+		PFLU_RS05865	0.52	+1.0
1,315,899	+		PFLU_RS05865	0.52	+1.8
1,315,899	+		PFLU_RS05865	0.52	+2.6
1,315,899	+		PFLU_RS05865	0.52	-1.1
1,315,899	+		PFLU_RS05865	0.52	+0.2
1,315,899	+		PFLU_RS05865	0.52	+0.7
1,315,899	+		PFLU_RS05865	0.52	-1.9
1,315,899	+		PFLU_RS05865	0.52	-1.1
1,315,899	+		PFLU_RS05865	0.52	+1.4
1,315,899	+		PFLU_RS05865	0.52	-2.7
1,315,899	+		PFLU_RS05865	0.52	+0.8
1,315,899	+		PFLU_RS05865	0.52	-1.9
1,315,899	+		PFLU_RS05865	0.52	-1.7
1,315,899	+		PFLU_RS05865	0.52	-1.2
1,315,899	+		PFLU_RS05865	0.52	+1.2
1,315,899	+		PFLU_RS05865	0.52	-1.5
1,315,899	+		PFLU_RS05865	0.52	+1.3
1,315,899	+		PFLU_RS05865	0.52	-1.6
1,315,899	+		PFLU_RS05865	0.52	+3.2
1,315,899	+		PFLU_RS05865	0.52	-2.0
1,315,899	+		PFLU_RS05865	0.52	+3.4
1,315,899	+		PFLU_RS05865	0.52	-0.4
1,315,899	+		PFLU_RS05865	0.52	+1.1
1,315,900	-		PFLU_RS05865	0.52	+0.1
1,315,900	-		PFLU_RS05865	0.52	-0.4
1,315,900	-		PFLU_RS05865	0.52	+0.7
1,315,900	-		PFLU_RS05865	0.52	-0.1
1,315,900	-		PFLU_RS05865	0.52	-0.9
1,315,900	-		PFLU_RS05865	0.52	-0.1
1,315,900	-		PFLU_RS05865	0.52	-2.0
1,315,900	-		PFLU_RS05865	0.52	+1.2
1,315,900	-		PFLU_RS05865	0.52	-1.5
1,315,900	-		PFLU_RS05865	0.52	-0.9
1,315,900	-		PFLU_RS05865	0.52	-0.1
1,315,900	-		PFLU_RS05865	0.52	-1.6
1,315,900	-		PFLU_RS05865	0.52	+1.4
1,315,900	-		PFLU_RS05865	0.52	-0.9
1,315,900	-		PFLU_RS05865	0.52	-0.7
1,315,900	-		PFLU_RS05865	0.52	+2.3
1,315,900	-		PFLU_RS05865	0.52	-0.7
1,316,040	+		PFLU_RS05865	0.66	+0.5
1,316,283	+				-0.2
1,316,283	+				+0.4
1,316,283	+				+0.5
1,316,283	+				+1.1
1,316,283	+				-0.0
1,316,283	+				+4.3
1,316,283	+				-0.2
1,316,283	+				-0.6
1,316,283	+				-1.4
1,316,283	+				-0.2
1,316,284	-				-1.8
1,316,284	-				+1.0
1,316,284	-				-1.4
1,316,284	-				+0.4
1,316,284	-				-1.4
1,316,284	-				-0.8
1,316,284	-				-0.2
1,316,284	-				+0.5
1,316,284	-				+0.9
1,316,284	-				+1.2
1,316,285	+				+1.5
1,316,285	+				-0.4
1,316,285	+				-0.8
1,316,285	+				+0.8
1,316,285	+				+0.1
1,316,285	+				+0.7
1,316,285	+				-1.3
1,316,285	+				+3.2
1,316,285	+				+0.4
1,316,285	+				-0.6
1,316,286	-				+1.8
1,316,286	-				+1.6
1,316,286	-				-0.6
1,316,286	-				+2.2
1,316,286	-				-0.1
1,316,286	-				+1.7
1,316,286	-				+1.0
1,316,286	-				+0.6
1,316,286	-				+1.9
1,316,286	-				-3.0
1,316,380	-				-0.9
1,316,380	-				+2.1
1,316,380	-				-0.4
1,316,380	-				+0.4
1,316,410	+				+0.0
1,316,410	+				-0.9
1,316,410	+				-0.8
1,316,410	+				-1.3
1,316,411	-				-2.3
1,316,411	-				+1.4
1,316,411	-				-1.3
1,316,411	-				+0.6
1,316,411	-				+0.2
1,316,411	-				+0.4
1,316,455	+				+1.2
1,316,455	+				+0.0
1,316,456	-				+0.5
1,316,571	+		PFLU_RS05870	0.30	+2.3
1,316,571	+		PFLU_RS05870	0.30	+2.4
1,316,571	+		PFLU_RS05870	0.30	-2.4
1,316,571	+		PFLU_RS05870	0.30	-0.9
1,316,571	+		PFLU_RS05870	0.30	-0.7
1,316,571	+		PFLU_RS05870	0.30	-1.3
1,316,571	+		PFLU_RS05870	0.30	+1.7
1,316,571	+		PFLU_RS05870	0.30	-1.9
1,316,571	+		PFLU_RS05870	0.30	+0.1
1,316,571	+		PFLU_RS05870	0.30	+1.1
1,316,572	-		PFLU_RS05870	0.30	+1.2
1,316,572	-		PFLU_RS05870	0.30	-2.8
1,316,598	+		PFLU_RS05870	0.35	+1.8
1,316,598	+		PFLU_RS05870	0.35	+1.8
1,316,598	+		PFLU_RS05870	0.35	-0.5
1,316,599	-		PFLU_RS05870	0.35	-1.5
1,316,599	-		PFLU_RS05870	0.35	-0.0
1,316,599	-		PFLU_RS05870	0.35	-0.3
1,316,599	-		PFLU_RS05870	0.35	-0.4
1,316,610	+		PFLU_RS05870	0.37	-2.5
1,316,610	+		PFLU_RS05870	0.37	+1.4
1,316,610	+		PFLU_RS05870	0.37	-3.5
1,316,610	+		PFLU_RS05870	0.37	-1.6
1,316,610	+		PFLU_RS05870	0.37	+2.7
1,316,610	+		PFLU_RS05870	0.37	+1.1
1,316,610	+		PFLU_RS05870	0.37	-1.2
1,316,611	-		PFLU_RS05870	0.37	-1.3
1,316,611	-		PFLU_RS05870	0.37	-0.6
1,316,611	-		PFLU_RS05870	0.37	+0.6
1,316,611	-		PFLU_RS05870	0.37	+0.8
1,316,611	-		PFLU_RS05870	0.37	+0.7
1,316,611	-		PFLU_RS05870	0.37	-2.9
1,316,611	-		PFLU_RS05870	0.37	+0.2
1,316,611	-		PFLU_RS05870	0.37	+0.4
1,316,611	-		PFLU_RS05870	0.37	+2.4
1,316,611	-		PFLU_RS05870	0.37	-3.1
1,316,611	-		PFLU_RS05870	0.37	+0.7
1,316,611	-		PFLU_RS05870	0.37	-0.6
1,316,718	+		PFLU_RS05870	0.56	-0.2
1,316,718	+		PFLU_RS05870	0.56	+1.1
1,316,718	+		PFLU_RS05870	0.56	-3.3
1,316,718	+		PFLU_RS05870	0.56	-1.5
1,316,718	+		PFLU_RS05870	0.56	-0.1
1,316,718	+		PFLU_RS05870	0.56	+1.1
1,316,719	-		PFLU_RS05870	0.57	+2.7
1,316,719	-		PFLU_RS05870	0.57	-0.3
1,316,719	-		PFLU_RS05870	0.57	-1.4
1,316,722	+		PFLU_RS05870	0.57	-1.3
1,316,722	+		PFLU_RS05870	0.57	+1.0
1,316,722	+		PFLU_RS05870	0.57	-1.9
1,316,722	+		PFLU_RS05870	0.57	+1.0
1,316,722	+		PFLU_RS05870	0.57	+0.6
1,316,722	+		PFLU_RS05870	0.57	-2.1
1,316,723	-		PFLU_RS05870	0.57	-2.5
1,316,723	-		PFLU_RS05870	0.57	+0.3
1,316,723	-		PFLU_RS05870	0.57	+0.3
1,316,723	-		PFLU_RS05870	0.57	+0.6
1,316,723	-		PFLU_RS05870	0.57	+0.8
1,316,723	-		PFLU_RS05870	0.57	+1.6
1,316,723	-		PFLU_RS05870	0.57	-0.2
1,316,723	-		PFLU_RS05870	0.57	-0.4
1,316,723	-		PFLU_RS05870	0.57	+2.6
1,316,723	-		PFLU_RS05870	0.57	-1.9
1,316,758	+		PFLU_RS05870	0.64	-1.8
1,316,852	+		PFLU_RS05870	0.80	+0.1
1,316,882	+		PFLU_RS05870	0.86	+1.2
1,316,883	-		PFLU_RS05870	0.86	+1.5
1,316,883	-		PFLU_RS05870	0.86	-1.3
1,316,947	+				+2.3
1,316,947	+				+2.2
1,316,959	-				+0.4
1,316,959	-				-0.8
1,316,964	+				+2.0
1,316,964	+				+2.9
1,316,964	+				-0.1
1,316,964	+				-1.4
1,316,964	+				-0.0
1,316,964	+				-0.2
1,316,965	-				+2.4
1,316,965	-				+0.2
1,316,965	-				-1.7
1,316,965	-				+1.6
1,316,965	-				+0.7
1,317,072	+		PFLU_RS05875	0.25	-2.6
1,317,180	+		PFLU_RS05875	0.46	+0.3
1,317,181	-		PFLU_RS05875	0.47	-1.1
1,317,181	-		PFLU_RS05875	0.47	-1.9