Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27765 and BWI76_RS27770 are separated by 212 nucleotides BWI76_RS27770 and BWI76_RS27775 overlap by 17 nucleotides BWI76_RS27775 and BWI76_RS27780 are separated by 84 nucleotides
BWI76_RS27765: BWI76_RS27765 - MFS transporter, at 5,761,352 to 5,762,533
_RS27765
BWI76_RS27770: BWI76_RS27770 - hypothetical protein, at 5,762,746 to 5,763,105
_RS27770
BWI76_RS27775: BWI76_RS27775 - transcriptional regulator, at 5,763,089 to 5,763,412
_RS27775
BWI76_RS27780: BWI76_RS27780 - hypothetical protein, at 5,763,497 to 5,763,949
_RS27780
Position (kb) 5762
5763
5764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5761.770 kb on - strand, within BWI76_RS27765 at 5761.810 kb on - strand, within BWI76_RS27765 at 5761.882 kb on + strand, within BWI76_RS27765 at 5762.050 kb on - strand, within BWI76_RS27765 at 5762.100 kb on + strand, within BWI76_RS27765 at 5762.171 kb on + strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.400 kb on + strand, within BWI76_RS27765 at 5762.536 kb on - strand at 5762.536 kb on - strand at 5762.784 kb on - strand, within BWI76_RS27770 at 5762.856 kb on - strand, within BWI76_RS27770 at 5762.863 kb on - strand, within BWI76_RS27770 at 5762.932 kb on + strand, within BWI76_RS27770 at 5762.932 kb on - strand, within BWI76_RS27770 at 5762.959 kb on + strand, within BWI76_RS27770 at 5763.089 kb on - strand at 5763.131 kb on + strand, within BWI76_RS27775 at 5763.401 kb on - strand at 5763.417 kb on + strand at 5763.417 kb on + strand at 5763.453 kb on - strand at 5763.471 kb on + strand at 5763.550 kb on + strand, within BWI76_RS27780 at 5763.763 kb on + strand, within BWI76_RS27780 at 5763.942 kb on - strand at 5763.942 kb on - strand at 5764.074 kb on - strand at 5764.095 kb on - strand at 5764.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 5,761,770 - BWI76_RS27765 0.35 -2.4 5,761,810 - BWI76_RS27765 0.39 -3.5 5,761,882 + BWI76_RS27765 0.45 +0.5 5,762,050 - BWI76_RS27765 0.59 +0.0 5,762,100 + BWI76_RS27765 0.63 -0.5 5,762,171 + BWI76_RS27765 0.69 -1.1 5,762,178 - BWI76_RS27765 0.70 -3.3 5,762,178 - BWI76_RS27765 0.70 -0.2 5,762,184 - BWI76_RS27765 0.70 -2.7 5,762,184 - BWI76_RS27765 0.70 +1.8 5,762,400 + BWI76_RS27765 0.89 +0.9 5,762,536 - -3.1 5,762,536 - +0.5 5,762,784 - BWI76_RS27770 0.11 -2.4 5,762,856 - BWI76_RS27770 0.31 -1.1 5,762,863 - BWI76_RS27770 0.33 -1.7 5,762,932 + BWI76_RS27770 0.52 -0.1 5,762,932 - BWI76_RS27770 0.52 -2.1 5,762,959 + BWI76_RS27770 0.59 +0.0 5,763,089 - +0.7 5,763,131 + BWI76_RS27775 0.13 +0.9 5,763,401 - -1.9 5,763,417 + -0.2 5,763,417 + +0.0 5,763,453 - -2.8 5,763,471 + +0.2 5,763,550 + BWI76_RS27780 0.12 -1.9 5,763,763 + BWI76_RS27780 0.59 -0.6 5,763,942 - +1.9 5,763,942 - -0.7 5,764,074 - -1.7 5,764,095 - +1.2 5,764,095 - +1.8
Or see this region's nucleotide sequence