Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26675 and BWI76_RS26680 are separated by 185 nucleotides BWI76_RS26680 and BWI76_RS26685 are separated by 71 nucleotides
BWI76_RS26675: BWI76_RS26675 - phosphoesterase PA-phosphatase-like protein, at 5,523,043 to 5,524,314
_RS26675
BWI76_RS26680: BWI76_RS26680 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,524,500 to 5,525,342
_RS26680
BWI76_RS26685: BWI76_RS26685 - glutathione-disulfide reductase, at 5,525,414 to 5,526,766
_RS26685
Position (kb) 5524
5525
5526 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5523.526 kb on + strand, within BWI76_RS26675 at 5523.608 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.652 kb on + strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.706 kb on - strand, within BWI76_RS26675 at 5523.762 kb on + strand, within BWI76_RS26675 at 5523.820 kb on + strand, within BWI76_RS26675 at 5523.828 kb on - strand, within BWI76_RS26675 at 5523.916 kb on + strand, within BWI76_RS26675 at 5523.921 kb on - strand, within BWI76_RS26675 at 5523.997 kb on + strand, within BWI76_RS26675 at 5524.214 kb on + strand at 5524.397 kb on - strand at 5524.432 kb on + strand at 5524.442 kb on + strand at 5524.445 kb on - strand at 5524.512 kb on + strand at 5524.515 kb on - strand at 5524.538 kb on - strand at 5524.586 kb on - strand, within BWI76_RS26680 at 5524.633 kb on - strand, within BWI76_RS26680 at 5524.719 kb on - strand, within BWI76_RS26680 at 5524.760 kb on + strand, within BWI76_RS26680 at 5524.784 kb on + strand, within BWI76_RS26680 at 5524.827 kb on + strand, within BWI76_RS26680 at 5524.889 kb on + strand, within BWI76_RS26680 at 5524.938 kb on - strand, within BWI76_RS26680 at 5524.953 kb on - strand, within BWI76_RS26680 at 5525.527 kb on + strand at 5525.758 kb on - strand, within BWI76_RS26685 at 5525.845 kb on - strand, within BWI76_RS26685 at 5525.882 kb on - strand, within BWI76_RS26685 at 5526.091 kb on - strand, within BWI76_RS26685 at 5526.159 kb on + strand, within BWI76_RS26685 at 5526.170 kb on + strand, within BWI76_RS26685 at 5526.178 kb on - strand, within BWI76_RS26685
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 5,523,526 + BWI76_RS26675 0.38 +0.2 5,523,608 + BWI76_RS26675 0.44 -0.3 5,523,647 + BWI76_RS26675 0.47 +1.7 5,523,647 + BWI76_RS26675 0.47 +0.1 5,523,647 + BWI76_RS26675 0.47 +0.6 5,523,652 + BWI76_RS26675 0.48 -0.7 5,523,655 - BWI76_RS26675 0.48 -0.1 5,523,655 - BWI76_RS26675 0.48 +0.2 5,523,698 + BWI76_RS26675 0.51 +0.5 5,523,698 + BWI76_RS26675 0.51 +1.8 5,523,706 - BWI76_RS26675 0.52 -0.7 5,523,762 + BWI76_RS26675 0.57 +0.7 5,523,820 + BWI76_RS26675 0.61 +0.9 5,523,828 - BWI76_RS26675 0.62 -0.1 5,523,916 + BWI76_RS26675 0.69 -1.4 5,523,921 - BWI76_RS26675 0.69 -4.1 5,523,997 + BWI76_RS26675 0.75 +0.3 5,524,214 + +2.0 5,524,397 - +1.1 5,524,432 + +1.5 5,524,442 + +0.1 5,524,445 - -0.6 5,524,512 + +0.9 5,524,515 - -0.8 5,524,538 - +0.2 5,524,586 - BWI76_RS26680 0.10 -0.1 5,524,633 - BWI76_RS26680 0.16 +0.8 5,524,719 - BWI76_RS26680 0.26 +0.4 5,524,760 + BWI76_RS26680 0.31 +0.9 5,524,784 + BWI76_RS26680 0.34 -0.1 5,524,827 + BWI76_RS26680 0.39 -0.7 5,524,889 + BWI76_RS26680 0.46 +0.9 5,524,938 - BWI76_RS26680 0.52 +2.4 5,524,953 - BWI76_RS26680 0.54 -2.2 5,525,527 + -3.6 5,525,758 - BWI76_RS26685 0.25 +0.3 5,525,845 - BWI76_RS26685 0.32 -0.6 5,525,882 - BWI76_RS26685 0.35 -0.1 5,526,091 - BWI76_RS26685 0.50 -2.2 5,526,159 + BWI76_RS26685 0.55 -1.7 5,526,170 + BWI76_RS26685 0.56 -0.9 5,526,178 - BWI76_RS26685 0.56 +0.9
Or see this region's nucleotide sequence