Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26305 and BWI76_RS26310 are separated by 271 nucleotides BWI76_RS26310 and BWI76_RS26315 are separated by 229 nucleotides
BWI76_RS26305: BWI76_RS26305 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein, at 5,444,127 to 5,445,443
_RS26305
BWI76_RS26310: BWI76_RS26310 - IclR family transcriptional regulator, at 5,445,715 to 5,446,482
_RS26310
BWI76_RS26315: BWI76_RS26315 - dihydrodipicolinate synthase family protein, at 5,446,712 to 5,447,611
_RS26315
Position (kb) 5445
5446
5447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5444.738 kb on + strand, within BWI76_RS26305 at 5444.772 kb on + strand, within BWI76_RS26305 at 5444.968 kb on - strand, within BWI76_RS26305 at 5445.123 kb on + strand, within BWI76_RS26305 at 5445.179 kb on + strand, within BWI76_RS26305 at 5445.304 kb on - strand, within BWI76_RS26305 at 5445.324 kb on - strand at 5445.370 kb on - strand at 5445.375 kb on + strand at 5445.395 kb on + strand at 5445.413 kb on + strand at 5445.421 kb on + strand at 5445.450 kb on + strand at 5445.610 kb on - strand at 5445.623 kb on - strand at 5445.623 kb on - strand at 5445.636 kb on + strand at 5445.644 kb on - strand at 5445.644 kb on - strand at 5445.698 kb on - strand at 5445.726 kb on + strand at 5445.731 kb on + strand at 5445.763 kb on + strand at 5445.771 kb on - strand at 5445.790 kb on - strand at 5445.790 kb on - strand at 5445.804 kb on + strand, within BWI76_RS26310 at 5445.817 kb on - strand, within BWI76_RS26310 at 5445.851 kb on - strand, within BWI76_RS26310 at 5445.853 kb on + strand, within BWI76_RS26310 at 5445.906 kb on + strand, within BWI76_RS26310 at 5445.922 kb on + strand, within BWI76_RS26310 at 5445.922 kb on + strand, within BWI76_RS26310 at 5445.922 kb on + strand, within BWI76_RS26310 at 5445.930 kb on - strand, within BWI76_RS26310 at 5445.930 kb on - strand, within BWI76_RS26310 at 5445.930 kb on - strand, within BWI76_RS26310 at 5445.930 kb on - strand, within BWI76_RS26310 at 5445.930 kb on - strand, within BWI76_RS26310 at 5445.932 kb on + strand, within BWI76_RS26310 at 5445.932 kb on + strand, within BWI76_RS26310 at 5445.932 kb on + strand, within BWI76_RS26310 at 5445.940 kb on - strand, within BWI76_RS26310 at 5445.940 kb on - strand, within BWI76_RS26310 at 5446.037 kb on + strand, within BWI76_RS26310 at 5446.089 kb on + strand, within BWI76_RS26310 at 5446.126 kb on + strand, within BWI76_RS26310 at 5446.126 kb on + strand, within BWI76_RS26310 at 5446.131 kb on + strand, within BWI76_RS26310 at 5446.179 kb on - strand, within BWI76_RS26310 at 5446.253 kb on - strand, within BWI76_RS26310 at 5446.754 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.765 kb on + strand at 5446.765 kb on + strand at 5446.767 kb on - strand at 5446.767 kb on - strand at 5446.782 kb on + strand at 5446.790 kb on - strand at 5446.837 kb on - strand, within BWI76_RS26315 at 5446.837 kb on - strand, within BWI76_RS26315 at 5446.842 kb on - strand, within BWI76_RS26315 at 5446.842 kb on - strand, within BWI76_RS26315 at 5446.847 kb on - strand, within BWI76_RS26315 at 5446.917 kb on + strand, within BWI76_RS26315 at 5446.927 kb on - strand, within BWI76_RS26315 at 5446.962 kb on + strand, within BWI76_RS26315 at 5446.969 kb on + strand, within BWI76_RS26315 at 5446.980 kb on - strand, within BWI76_RS26315 at 5446.982 kb on + strand, within BWI76_RS26315 at 5446.988 kb on - strand, within BWI76_RS26315 at 5446.988 kb on - strand, within BWI76_RS26315 at 5446.989 kb on + strand, within BWI76_RS26315 at 5446.993 kb on - strand, within BWI76_RS26315 at 5446.993 kb on - strand, within BWI76_RS26315 at 5447.050 kb on - strand at 5447.058 kb on - strand, within BWI76_RS26315 at 5447.130 kb on + strand, within BWI76_RS26315 at 5447.134 kb on + strand, within BWI76_RS26315 at 5447.151 kb on + strand, within BWI76_RS26315 at 5447.151 kb on + strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.161 kb on + strand, within BWI76_RS26315 at 5447.186 kb on - strand, within BWI76_RS26315 at 5447.195 kb on - strand, within BWI76_RS26315 at 5447.205 kb on - strand, within BWI76_RS26315 at 5447.239 kb on + strand, within BWI76_RS26315 at 5447.244 kb on + strand, within BWI76_RS26315 at 5447.247 kb on - strand, within BWI76_RS26315 at 5447.284 kb on + strand, within BWI76_RS26315 at 5447.292 kb on - strand at 5447.316 kb on - strand, within BWI76_RS26315 at 5447.321 kb on - strand, within BWI76_RS26315 at 5447.354 kb on + strand, within BWI76_RS26315 at 5447.354 kb on + strand, within BWI76_RS26315 at 5447.362 kb on - strand, within BWI76_RS26315 at 5447.370 kb on + strand, within BWI76_RS26315
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 5,444,738 + BWI76_RS26305 0.46 -1.2 5,444,772 + BWI76_RS26305 0.49 +1.7 5,444,968 - BWI76_RS26305 0.64 -0.6 5,445,123 + BWI76_RS26305 0.76 -0.5 5,445,179 + BWI76_RS26305 0.80 -0.2 5,445,304 - BWI76_RS26305 0.89 -1.6 5,445,324 - +1.7 5,445,370 - -1.4 5,445,375 + +0.6 5,445,395 + -0.1 5,445,413 + +0.3 5,445,421 + -0.9 5,445,450 + -0.1 5,445,610 - -1.8 5,445,623 - -2.0 5,445,623 - +1.0 5,445,636 + -1.0 5,445,644 - -0.2 5,445,644 - -0.4 5,445,698 - +1.3 5,445,726 + -0.8 5,445,731 + -3.0 5,445,763 + -0.1 5,445,771 - -0.0 5,445,790 - -0.6 5,445,790 - +0.5 5,445,804 + BWI76_RS26310 0.12 -2.2 5,445,817 - BWI76_RS26310 0.13 +1.0 5,445,851 - BWI76_RS26310 0.18 +0.1 5,445,853 + BWI76_RS26310 0.18 +0.5 5,445,906 + BWI76_RS26310 0.25 -0.8 5,445,922 + BWI76_RS26310 0.27 -2.3 5,445,922 + BWI76_RS26310 0.27 +0.5 5,445,922 + BWI76_RS26310 0.27 -0.0 5,445,930 - BWI76_RS26310 0.28 -4.7 5,445,930 - BWI76_RS26310 0.28 -1.6 5,445,930 - BWI76_RS26310 0.28 -1.1 5,445,930 - BWI76_RS26310 0.28 +1.3 5,445,930 - BWI76_RS26310 0.28 -0.4 5,445,932 + BWI76_RS26310 0.28 +0.7 5,445,932 + BWI76_RS26310 0.28 -2.0 5,445,932 + BWI76_RS26310 0.28 -0.0 5,445,940 - BWI76_RS26310 0.29 -2.4 5,445,940 - BWI76_RS26310 0.29 +1.0 5,446,037 + BWI76_RS26310 0.42 +0.4 5,446,089 + BWI76_RS26310 0.49 +0.8 5,446,126 + BWI76_RS26310 0.54 +1.0 5,446,126 + BWI76_RS26310 0.54 +1.2 5,446,131 + BWI76_RS26310 0.54 -0.5 5,446,179 - BWI76_RS26310 0.60 +1.0 5,446,253 - BWI76_RS26310 0.70 -1.3 5,446,754 + +0.3 5,446,759 + +0.8 5,446,759 + +0.5 5,446,759 + -0.1 5,446,759 + +1.4 5,446,759 + -2.1 5,446,759 + -2.6 5,446,759 + -1.6 5,446,765 + +1.3 5,446,765 + -3.7 5,446,767 - +1.1 5,446,767 - -0.4 5,446,782 + -1.4 5,446,790 - +0.4 5,446,837 - BWI76_RS26315 0.14 +0.1 5,446,837 - BWI76_RS26315 0.14 +0.9 5,446,842 - BWI76_RS26315 0.14 -0.0 5,446,842 - BWI76_RS26315 0.14 +2.1 5,446,847 - BWI76_RS26315 0.15 +1.4 5,446,917 + BWI76_RS26315 0.23 -0.0 5,446,927 - BWI76_RS26315 0.24 -0.0 5,446,962 + BWI76_RS26315 0.28 +0.3 5,446,969 + BWI76_RS26315 0.29 -1.0 5,446,980 - BWI76_RS26315 0.30 +1.5 5,446,982 + BWI76_RS26315 0.30 -2.0 5,446,988 - BWI76_RS26315 0.31 -0.7 5,446,988 - BWI76_RS26315 0.31 +0.3 5,446,989 + BWI76_RS26315 0.31 -0.0 5,446,993 - BWI76_RS26315 0.31 -0.4 5,446,993 - BWI76_RS26315 0.31 -2.6 5,447,050 - +1.0 5,447,058 - BWI76_RS26315 0.38 +1.3 5,447,130 + BWI76_RS26315 0.46 -2.4 5,447,134 + BWI76_RS26315 0.47 -0.5 5,447,151 + BWI76_RS26315 0.49 -1.0 5,447,151 + BWI76_RS26315 0.49 -0.0 5,447,159 - BWI76_RS26315 0.50 +0.6 5,447,159 - BWI76_RS26315 0.50 +1.5 5,447,159 - BWI76_RS26315 0.50 +0.4 5,447,159 - BWI76_RS26315 0.50 +0.2 5,447,159 - BWI76_RS26315 0.50 +0.6 5,447,159 - BWI76_RS26315 0.50 +0.2 5,447,159 - BWI76_RS26315 0.50 -2.4 5,447,161 + BWI76_RS26315 0.50 -1.4 5,447,186 - BWI76_RS26315 0.53 -0.1 5,447,195 - BWI76_RS26315 0.54 -0.7 5,447,205 - BWI76_RS26315 0.55 -2.2 5,447,239 + BWI76_RS26315 0.59 -1.4 5,447,244 + BWI76_RS26315 0.59 +0.8 5,447,247 - BWI76_RS26315 0.59 -1.5 5,447,284 + BWI76_RS26315 0.64 +3.3 5,447,292 - +1.0 5,447,316 - BWI76_RS26315 0.67 +0.3 5,447,321 - BWI76_RS26315 0.68 +0.9 5,447,354 + BWI76_RS26315 0.71 +2.0 5,447,354 + BWI76_RS26315 0.71 -0.5 5,447,362 - BWI76_RS26315 0.72 -0.2 5,447,370 + BWI76_RS26315 0.73 +0.2
Or see this region's nucleotide sequence