Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23315 and BWI76_RS23320 are separated by 23 nucleotides BWI76_RS23320 and BWI76_RS23325 are separated by 19 nucleotides BWI76_RS23325 and BWI76_RS23330 are separated by 94 nucleotides
BWI76_RS23315: BWI76_RS23315 - acyl-[ACP]--phospholipid O-acyltransferase, at 4,862,058 to 4,864,217
_RS23315
BWI76_RS23320: BWI76_RS23320 - hypothetical protein, at 4,864,241 to 4,864,432
_RS23320
BWI76_RS23325: BWI76_RS23325 - hypothetical protein, at 4,864,452 to 4,864,745
_RS23325
BWI76_RS23330: BWI76_RS23330 - transcriptional regulator GalR, at 4,864,840 to 4,865,856
_RS23330
Position (kb) 4864
4865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4863.667 kb on + strand, within BWI76_RS23315 at 4863.927 kb on + strand, within BWI76_RS23315 at 4864.174 kb on - strand at 4864.174 kb on - strand at 4864.313 kb on - strand, within BWI76_RS23320 at 4864.485 kb on + strand, within BWI76_RS23325 at 4864.485 kb on + strand, within BWI76_RS23325 at 4864.495 kb on + strand, within BWI76_RS23325 at 4864.529 kb on + strand, within BWI76_RS23325 at 4864.729 kb on + strand at 4864.737 kb on - strand at 4864.753 kb on - strand at 4865.021 kb on + strand, within BWI76_RS23330 at 4865.038 kb on + strand, within BWI76_RS23330 at 4865.092 kb on + strand, within BWI76_RS23330 at 4865.276 kb on - strand, within BWI76_RS23330 at 4865.306 kb on - strand, within BWI76_RS23330 at 4865.395 kb on - strand, within BWI76_RS23330 at 4865.440 kb on + strand, within BWI76_RS23330 at 4865.517 kb on + strand, within BWI76_RS23330
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,863,667 + BWI76_RS23315 0.74 -0.6 4,863,927 + BWI76_RS23315 0.87 +0.9 4,864,174 - +0.3 4,864,174 - -1.1 4,864,313 - BWI76_RS23320 0.38 +0.7 4,864,485 + BWI76_RS23325 0.11 +1.1 4,864,485 + BWI76_RS23325 0.11 +0.7 4,864,495 + BWI76_RS23325 0.15 -0.1 4,864,529 + BWI76_RS23325 0.26 -2.6 4,864,729 + -0.7 4,864,737 - -1.8 4,864,753 - +0.4 4,865,021 + BWI76_RS23330 0.18 -1.4 4,865,038 + BWI76_RS23330 0.19 -2.3 4,865,092 + BWI76_RS23330 0.25 -4.6 4,865,276 - BWI76_RS23330 0.43 -1.1 4,865,306 - BWI76_RS23330 0.46 -2.1 4,865,395 - BWI76_RS23330 0.55 -1.2 4,865,440 + BWI76_RS23330 0.59 -3.3 4,865,517 + BWI76_RS23330 0.67 +0.0
Or see this region's nucleotide sequence