Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23275 and BWI76_RS23280 are separated by 39 nucleotides BWI76_RS23280 and BWI76_RS23285 are separated by 219 nucleotides BWI76_RS23285 and BWI76_RS23290 are separated by 16 nucleotides BWI76_RS23290 and BWI76_RS23295 are separated by 85 nucleotides BWI76_RS23295 and BWI76_RS23300 are separated by 124 nucleotides
BWI76_RS23275: BWI76_RS23275 - RNA pyrophosphohydrolase, at 4,856,343 to 4,856,873
_RS23275
BWI76_RS23280: BWI76_RS23280 - hypothetical protein, at 4,856,913 to 4,857,095
_RS23280
BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539
_RS23285
BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248
_RS23290
BWI76_RS23295: BWI76_RS23295 - tellurium resistance protein TerC, at 4,858,334 to 4,859,047
_RS23295
BWI76_RS23300: BWI76_RS23300 - YgdI/YgdR family lipoprotein, at 4,859,172 to 4,859,390
_RS23300
Position (kb) 4857
4858
4859 Strain fitness (log2 ratio) -2
-1
0
1 at 4856.929 kb on + strand at 4856.995 kb on + strand, within BWI76_RS23280 at 4857.274 kb on - strand at 4857.369 kb on + strand, within BWI76_RS23285 at 4857.584 kb on - strand at 4857.656 kb on + strand, within BWI76_RS23290 at 4857.840 kb on - strand, within BWI76_RS23290 at 4857.853 kb on + strand, within BWI76_RS23290 at 4857.927 kb on + strand, within BWI76_RS23290 at 4857.956 kb on - strand, within BWI76_RS23290 at 4858.052 kb on + strand, within BWI76_RS23290 at 4858.060 kb on - strand, within BWI76_RS23290 at 4858.129 kb on + strand, within BWI76_RS23290 at 4858.134 kb on + strand, within BWI76_RS23290 at 4858.137 kb on - strand, within BWI76_RS23290 at 4858.165 kb on + strand, within BWI76_RS23290 at 4858.282 kb on + strand at 4858.290 kb on - strand at 4858.365 kb on - strand at 4858.458 kb on - strand, within BWI76_RS23295 at 4858.487 kb on + strand, within BWI76_RS23295 at 4858.489 kb on + strand, within BWI76_RS23295 at 4858.525 kb on + strand, within BWI76_RS23295 at 4858.682 kb on + strand, within BWI76_RS23295 at 4858.760 kb on - strand, within BWI76_RS23295 at 4858.928 kb on + strand, within BWI76_RS23295 at 4858.975 kb on - strand, within BWI76_RS23295 at 4859.010 kb on + strand at 4859.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,856,929 + +0.6 4,856,995 + BWI76_RS23280 0.45 -0.1 4,857,274 - +0.7 4,857,369 + BWI76_RS23285 0.24 -0.1 4,857,584 - -0.1 4,857,656 + BWI76_RS23290 0.14 +0.7 4,857,840 - BWI76_RS23290 0.41 +0.4 4,857,853 + BWI76_RS23290 0.43 -0.7 4,857,927 + BWI76_RS23290 0.54 -0.2 4,857,956 - BWI76_RS23290 0.58 +0.4 4,858,052 + BWI76_RS23290 0.72 +0.2 4,858,060 - BWI76_RS23290 0.73 -0.5 4,858,129 + BWI76_RS23290 0.83 -1.1 4,858,134 + BWI76_RS23290 0.83 +0.5 4,858,137 - BWI76_RS23290 0.84 -0.4 4,858,165 + BWI76_RS23290 0.88 -2.3 4,858,282 + -2.5 4,858,290 - -0.1 4,858,365 - +0.0 4,858,458 - BWI76_RS23295 0.17 +0.4 4,858,487 + BWI76_RS23295 0.21 +0.4 4,858,489 + BWI76_RS23295 0.22 +0.1 4,858,525 + BWI76_RS23295 0.27 +1.2 4,858,682 + BWI76_RS23295 0.49 -0.1 4,858,760 - BWI76_RS23295 0.60 +0.1 4,858,928 + BWI76_RS23295 0.83 +0.8 4,858,975 - BWI76_RS23295 0.90 +0.3 4,859,010 + +0.4 4,859,146 - -0.6
Or see this region's nucleotide sequence