Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20955 and BWI76_RS20960 are separated by 9 nucleotides BWI76_RS20960 and BWI76_RS20965 are separated by 265 nucleotides
BWI76_RS20955: BWI76_RS20955 - 6-phospho-beta-glucosidase, at 4,379,771 to 4,381,201
_RS20955
BWI76_RS20960: BWI76_RS20960 - ROK family protein, at 4,381,211 to 4,382,104
_RS20960
BWI76_RS20965: BWI76_RS20965 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,382,370 to 4,383,407
_RS20965
Position (kb) 4381
4382
4383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4380.301 kb on - strand, within BWI76_RS20955 at 4380.302 kb on - strand, within BWI76_RS20955 at 4380.324 kb on + strand, within BWI76_RS20955 at 4380.359 kb on + strand, within BWI76_RS20955 at 4380.359 kb on + strand, within BWI76_RS20955 at 4380.367 kb on - strand, within BWI76_RS20955 at 4380.522 kb on - strand, within BWI76_RS20955 at 4380.765 kb on - strand, within BWI76_RS20955 at 4380.870 kb on + strand, within BWI76_RS20955 at 4381.207 kb on + strand at 4381.291 kb on + strand at 4381.419 kb on + strand, within BWI76_RS20960 at 4381.427 kb on - strand, within BWI76_RS20960 at 4381.475 kb on - strand, within BWI76_RS20960 at 4381.839 kb on - strand, within BWI76_RS20960 at 4381.839 kb on - strand, within BWI76_RS20960 at 4382.355 kb on + strand at 4382.628 kb on - strand, within BWI76_RS20965 at 4382.639 kb on - strand, within BWI76_RS20965
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,380,301 - BWI76_RS20955 0.37 -1.4 4,380,302 - BWI76_RS20955 0.37 +0.4 4,380,324 + BWI76_RS20955 0.39 +0.3 4,380,359 + BWI76_RS20955 0.41 +0.4 4,380,359 + BWI76_RS20955 0.41 +0.8 4,380,367 - BWI76_RS20955 0.42 +1.0 4,380,522 - BWI76_RS20955 0.52 +0.2 4,380,765 - BWI76_RS20955 0.69 -0.9 4,380,870 + BWI76_RS20955 0.77 +0.3 4,381,207 + -0.6 4,381,291 + +1.2 4,381,419 + BWI76_RS20960 0.23 +2.3 4,381,427 - BWI76_RS20960 0.24 +0.3 4,381,475 - BWI76_RS20960 0.30 +3.6 4,381,839 - BWI76_RS20960 0.70 +1.1 4,381,839 - BWI76_RS20960 0.70 +1.1 4,382,355 + -2.8 4,382,628 - BWI76_RS20965 0.25 -3.9 4,382,639 - BWI76_RS20965 0.26 -3.9
Or see this region's nucleotide sequence