Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18720 and BWI76_RS18725 are separated by 9 nucleotides BWI76_RS18725 and BWI76_RS18730 overlap by 8 nucleotides
BWI76_RS18720: BWI76_RS18720 - MFS transporter, at 3,881,175 to 3,882,509
_RS18720
BWI76_RS18725: BWI76_RS18725 - hypothetical protein, at 3,882,519 to 3,883,250
_RS18725
BWI76_RS18730: BWI76_RS18730 - LysR family transcriptional regulator, at 3,883,243 to 3,884,160
_RS18730
Position (kb) 3882
3883
3884 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3881.581 kb on + strand, within BWI76_RS18720 at 3881.582 kb on - strand, within BWI76_RS18720 at 3881.589 kb on - strand, within BWI76_RS18720 at 3881.868 kb on + strand, within BWI76_RS18720 at 3882.092 kb on - strand, within BWI76_RS18720 at 3882.160 kb on - strand, within BWI76_RS18720 at 3882.161 kb on + strand, within BWI76_RS18720 at 3882.253 kb on + strand, within BWI76_RS18720 at 3882.660 kb on + strand, within BWI76_RS18725 at 3883.010 kb on + strand, within BWI76_RS18725 at 3883.032 kb on + strand, within BWI76_RS18725 at 3883.090 kb on - strand, within BWI76_RS18725 at 3883.320 kb on + strand at 3883.438 kb on + strand, within BWI76_RS18730 at 3883.502 kb on - strand, within BWI76_RS18730 at 3883.556 kb on + strand, within BWI76_RS18730 at 3884.076 kb on - strand at 3884.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 3,881,581 + BWI76_RS18720 0.30 +0.4 3,881,582 - BWI76_RS18720 0.30 +2.0 3,881,589 - BWI76_RS18720 0.31 +0.4 3,881,868 + BWI76_RS18720 0.52 +0.8 3,882,092 - BWI76_RS18720 0.69 +0.4 3,882,160 - BWI76_RS18720 0.74 +0.4 3,882,161 + BWI76_RS18720 0.74 +0.1 3,882,253 + BWI76_RS18720 0.81 -2.5 3,882,660 + BWI76_RS18725 0.19 +0.7 3,883,010 + BWI76_RS18725 0.67 -0.1 3,883,032 + BWI76_RS18725 0.70 +1.5 3,883,090 - BWI76_RS18725 0.78 +1.4 3,883,320 + +1.0 3,883,438 + BWI76_RS18730 0.21 -0.0 3,883,502 - BWI76_RS18730 0.28 +1.3 3,883,556 + BWI76_RS18730 0.34 +0.9 3,884,076 - +0.9 3,884,224 + +0.1
Or see this region's nucleotide sequence