Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15935 and BWI76_RS15940 are separated by 41 nucleotides BWI76_RS15940 and BWI76_RS15945 are separated by 139 nucleotides BWI76_RS15945 and BWI76_RS15950 overlap by 48 nucleotides BWI76_RS15950 and BWI76_RS15955 are separated by 127 nucleotides
BWI76_RS15935: BWI76_RS15935 - dimethyl sulfoxide reductase, at 3,305,324 to 3,306,181
_RS15935
BWI76_RS15940: BWI76_RS15940 - DMSO reductase maturation protein DsmD, at 3,306,223 to 3,306,831
_RS15940
BWI76_RS15945: BWI76_RS15945 - voltage-gated ClC-type chloride channel ClcB, at 3,306,971 to 3,308,266
_RS15945
BWI76_RS15950: BWI76_RS15950 - dethiobiotin synthase, at 3,308,219 to 3,308,914
_RS15950
BWI76_RS15955: BWI76_RS15955 - transcriptional regulator, at 3,309,042 to 3,310,262
_RS15955
Position (kb)
3306
3307
3308
3309 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3306.388 kb on + strand, within BWI76_RS15940 at 3306.753 kb on - strand, within BWI76_RS15940 at 3306.795 kb on + strand at 3306.809 kb on + strand at 3306.832 kb on + strand at 3307.119 kb on + strand, within BWI76_RS15945 at 3307.760 kb on - strand, within BWI76_RS15945 at 3308.117 kb on - strand, within BWI76_RS15945 at 3308.662 kb on - strand, within BWI76_RS15950 at 3308.806 kb on + strand, within BWI76_RS15950 at 3308.846 kb on - strand at 3309.001 kb on + strand at 3309.088 kb on + strand at 3309.088 kb on + strand at 3309.093 kb on + strand at 3309.101 kb on - strand at 3309.235 kb on - strand, within BWI76_RS15955 at 3309.236 kb on - strand, within BWI76_RS15955
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 3,306,388 + BWI76_RS15940 0.27 -0.7 3,306,753 - BWI76_RS15940 0.87 -1.6 3,306,795 + +0.3 3,306,809 + -0.0 3,306,832 + -0.6 3,307,119 + BWI76_RS15945 0.11 +1.7 3,307,760 - BWI76_RS15945 0.61 +1.2 3,308,117 - BWI76_RS15945 0.88 +0.8 3,308,662 - BWI76_RS15950 0.64 -0.1 3,308,806 + BWI76_RS15950 0.84 +0.3 3,308,846 - +1.1 3,309,001 + +1.2 3,309,088 + -1.0 3,309,088 + +0.2 3,309,093 + +1.2 3,309,101 - -0.8 3,309,235 - BWI76_RS15955 0.16 -3.2 3,309,236 - BWI76_RS15955 0.16 -1.2
Or see this region's nucleotide sequence