Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15085 and BWI76_RS15090 overlap by 11 nucleotides BWI76_RS15090 and BWI76_RS15095 are separated by 18 nucleotides BWI76_RS15095 and BWI76_RS15100 are separated by 29 nucleotides
BWI76_RS15085: BWI76_RS15085 - 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase, at 3,160,014 to 3,161,183
_RS15085
BWI76_RS15090: BWI76_RS15090 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 3,161,173 to 3,161,958
_RS15090
BWI76_RS15095: BWI76_RS15095 - isochorismatase, at 3,161,977 to 3,162,609
_RS15095
BWI76_RS15100: BWI76_RS15100 - phenazine biosynthesis protein PhzE, at 3,162,639 to 3,164,588
_RS15100
Position (kb) 3161
3162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3160.176 kb on - strand, within BWI76_RS15085 at 3160.222 kb on + strand, within BWI76_RS15085 at 3160.230 kb on - strand, within BWI76_RS15085 at 3160.258 kb on + strand, within BWI76_RS15085 at 3160.296 kb on - strand at 3160.358 kb on + strand, within BWI76_RS15085 at 3160.373 kb on + strand, within BWI76_RS15085 at 3160.386 kb on - strand, within BWI76_RS15085 at 3160.387 kb on - strand, within BWI76_RS15085 at 3160.391 kb on - strand, within BWI76_RS15085 at 3160.463 kb on + strand, within BWI76_RS15085 at 3160.477 kb on - strand, within BWI76_RS15085 at 3160.552 kb on + strand, within BWI76_RS15085 at 3160.677 kb on + strand, within BWI76_RS15085 at 3160.722 kb on + strand, within BWI76_RS15085 at 3160.785 kb on + strand, within BWI76_RS15085 at 3160.850 kb on + strand, within BWI76_RS15085 at 3160.889 kb on - strand at 3160.891 kb on - strand, within BWI76_RS15085 at 3160.981 kb on + strand, within BWI76_RS15085 at 3161.145 kb on - strand at 3161.190 kb on + strand at 3161.200 kb on - strand at 3161.270 kb on - strand, within BWI76_RS15090 at 3161.275 kb on + strand, within BWI76_RS15090 at 3161.314 kb on - strand, within BWI76_RS15090 at 3161.622 kb on + strand, within BWI76_RS15090 at 3161.719 kb on - strand, within BWI76_RS15090 at 3161.876 kb on + strand, within BWI76_RS15090 at 3161.884 kb on - strand at 3161.975 kb on - strand at 3161.991 kb on + strand at 3162.061 kb on - strand, within BWI76_RS15095 at 3162.120 kb on - strand at 3162.120 kb on - strand, within BWI76_RS15095 at 3162.229 kb on - strand, within BWI76_RS15095 at 3162.229 kb on - strand, within BWI76_RS15095 at 3162.545 kb on - strand, within BWI76_RS15095 at 3162.652 kb on - strand at 3162.720 kb on - strand at 3162.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 3,160,176 - BWI76_RS15085 0.14 +0.8 3,160,222 + BWI76_RS15085 0.18 +1.1 3,160,230 - BWI76_RS15085 0.18 +0.8 3,160,258 + BWI76_RS15085 0.21 -0.9 3,160,296 - +1.1 3,160,358 + BWI76_RS15085 0.29 -0.5 3,160,373 + BWI76_RS15085 0.31 +2.4 3,160,386 - BWI76_RS15085 0.32 +1.9 3,160,387 - BWI76_RS15085 0.32 -2.3 3,160,391 - BWI76_RS15085 0.32 -2.6 3,160,463 + BWI76_RS15085 0.38 +2.5 3,160,477 - BWI76_RS15085 0.40 -1.9 3,160,552 + BWI76_RS15085 0.46 -2.3 3,160,677 + BWI76_RS15085 0.57 +1.0 3,160,722 + BWI76_RS15085 0.61 -0.9 3,160,785 + BWI76_RS15085 0.66 +0.8 3,160,850 + BWI76_RS15085 0.71 -0.3 3,160,889 - -0.5 3,160,891 - BWI76_RS15085 0.75 -0.3 3,160,981 + BWI76_RS15085 0.83 +1.8 3,161,145 - +1.1 3,161,190 + +2.1 3,161,200 - +1.1 3,161,270 - BWI76_RS15090 0.12 +0.3 3,161,275 + BWI76_RS15090 0.13 +1.5 3,161,314 - BWI76_RS15090 0.18 +0.6 3,161,622 + BWI76_RS15090 0.57 +1.6 3,161,719 - BWI76_RS15090 0.69 +0.1 3,161,876 + BWI76_RS15090 0.89 +3.2 3,161,884 - +0.2 3,161,975 - -1.6 3,161,991 + +0.1 3,162,061 - BWI76_RS15095 0.13 +1.2 3,162,120 - +0.1 3,162,120 - BWI76_RS15095 0.23 +0.6 3,162,229 - BWI76_RS15095 0.40 +0.5 3,162,229 - BWI76_RS15095 0.40 -1.6 3,162,545 - BWI76_RS15095 0.90 -0.9 3,162,652 - -0.7 3,162,720 - +0.5 3,162,766 + -0.9
Or see this region's nucleotide sequence