Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13635 and BWI76_RS13640 are separated by 278 nucleotides BWI76_RS13640 and BWI76_RS13645 are separated by 76 nucleotides
BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471
_RS13635
BWI76_RS13640: BWI76_RS13640 - binding-protein-dependent transport system inner membrane protein, at 2,842,750 to 2,844,405
_RS13640
BWI76_RS13645: BWI76_RS13645 - N-hydroxyarylamine O-acetyltransferase, at 2,844,482 to 2,845,327
_RS13645
Position (kb)
2842
2843
2844
2845 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2841.823 kb on + strand, within BWI76_RS13635 at 2842.030 kb on - strand, within BWI76_RS13635 at 2842.254 kb on - strand, within BWI76_RS13635 at 2842.957 kb on + strand, within BWI76_RS13640 at 2843.913 kb on + strand, within BWI76_RS13640 at 2843.990 kb on - strand, within BWI76_RS13640 at 2844.089 kb on - strand, within BWI76_RS13640 at 2844.310 kb on + strand at 2844.531 kb on + strand at 2844.714 kb on - strand, within BWI76_RS13645 at 2844.732 kb on + strand, within BWI76_RS13645 at 2844.986 kb on - strand, within BWI76_RS13645 at 2845.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 2,841,823 + BWI76_RS13635 0.33 +1.6 2,842,030 - BWI76_RS13635 0.54 -0.4 2,842,254 - BWI76_RS13635 0.78 +0.1 2,842,957 + BWI76_RS13640 0.12 +0.5 2,843,913 + BWI76_RS13640 0.70 +1.4 2,843,990 - BWI76_RS13640 0.75 -0.1 2,844,089 - BWI76_RS13640 0.81 -0.1 2,844,310 + +0.6 2,844,531 + +0.8 2,844,714 - BWI76_RS13645 0.27 +0.4 2,844,732 + BWI76_RS13645 0.30 -3.6 2,844,986 - BWI76_RS13645 0.60 +0.6 2,845,315 - +1.3
Or see this region's nucleotide sequence