Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10705 and BWI76_RS10710 are separated by 212 nucleotides BWI76_RS10710 and BWI76_RS10715 are separated by 171 nucleotides BWI76_RS10715 and BWI76_RS10720 overlap by 11 nucleotides
BWI76_RS10705: BWI76_RS10705 - Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data) , at 2,262,446 to 2,263,210
_RS10705
BWI76_RS10710: BWI76_RS10710 - Glutamate--putrescine ligase (EC 6.3.1.11) (from data) , at 2,263,423 to 2,264,841
_RS10710
BWI76_RS10715: BWI76_RS10715 - hypothetical protein, at 2,265,013 to 2,265,201
_RS10715
BWI76_RS10720: BWI76_RS10720 - putrescine importer, at 2,265,191 to 2,266,582
_RS10720
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2262.473 kb on + strand at 2262.543 kb on + strand, within BWI76_RS10705 at 2262.563 kb on + strand, within BWI76_RS10705 at 2262.639 kb on - strand, within BWI76_RS10705 at 2262.796 kb on - strand, within BWI76_RS10705 at 2262.916 kb on + strand, within BWI76_RS10705 at 2262.928 kb on + strand, within BWI76_RS10705 at 2263.134 kb on + strand at 2263.506 kb on + strand at 2263.506 kb on + strand at 2264.061 kb on + strand, within BWI76_RS10710 at 2264.127 kb on + strand, within BWI76_RS10710 at 2264.135 kb on + strand, within BWI76_RS10710 at 2264.266 kb on + strand, within BWI76_RS10710 at 2264.645 kb on + strand, within BWI76_RS10710 at 2264.650 kb on + strand, within BWI76_RS10710 at 2264.949 kb on + strand at 2264.949 kb on + strand at 2264.990 kb on - strand at 2264.994 kb on + strand at 2265.219 kb on + strand at 2265.219 kb on + strand at 2265.260 kb on - strand at 2265.446 kb on + strand, within BWI76_RS10720 at 2265.522 kb on - strand, within BWI76_RS10720 at 2265.582 kb on - strand, within BWI76_RS10720 at 2265.602 kb on - strand, within BWI76_RS10720
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 2,262,473 + -0.8 2,262,543 + BWI76_RS10705 0.13 -0.2 2,262,563 + BWI76_RS10705 0.15 -1.8 2,262,639 - BWI76_RS10705 0.25 +0.2 2,262,796 - BWI76_RS10705 0.46 +1.1 2,262,916 + BWI76_RS10705 0.61 -1.3 2,262,928 + BWI76_RS10705 0.63 +1.2 2,263,134 + +0.6 2,263,506 + -0.0 2,263,506 + +0.8 2,264,061 + BWI76_RS10710 0.45 +0.3 2,264,127 + BWI76_RS10710 0.50 -0.2 2,264,135 + BWI76_RS10710 0.50 +2.0 2,264,266 + BWI76_RS10710 0.59 -1.9 2,264,645 + BWI76_RS10710 0.86 -1.9 2,264,650 + BWI76_RS10710 0.86 -0.6 2,264,949 + -0.6 2,264,949 + +0.1 2,264,990 - +2.2 2,264,994 + +0.8 2,265,219 + +1.0 2,265,219 + +0.5 2,265,260 - +0.2 2,265,446 + BWI76_RS10720 0.18 +0.5 2,265,522 - BWI76_RS10720 0.24 -0.7 2,265,582 - BWI76_RS10720 0.28 +0.4 2,265,602 - BWI76_RS10720 0.30 +0.1
Or see this region's nucleotide sequence