Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10710

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10705 and BWI76_RS10710 are separated by 212 nucleotidesBWI76_RS10710 and BWI76_RS10715 are separated by 171 nucleotidesBWI76_RS10715 and BWI76_RS10720 overlap by 11 nucleotides BWI76_RS10705: BWI76_RS10705 - Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data), at 2,262,446 to 2,263,210 _RS10705 BWI76_RS10710: BWI76_RS10710 - Glutamate--putrescine ligase (EC 6.3.1.11) (from data), at 2,263,423 to 2,264,841 _RS10710 BWI76_RS10715: BWI76_RS10715 - hypothetical protein, at 2,265,013 to 2,265,201 _RS10715 BWI76_RS10720: BWI76_RS10720 - putrescine importer, at 2,265,191 to 2,266,582 _RS10720 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -2 -1 0 1 2at 2262.473 kb on + strandat 2262.543 kb on + strand, within BWI76_RS10705at 2262.563 kb on + strand, within BWI76_RS10705at 2262.639 kb on - strand, within BWI76_RS10705at 2262.796 kb on - strand, within BWI76_RS10705at 2262.916 kb on + strand, within BWI76_RS10705at 2262.928 kb on + strand, within BWI76_RS10705at 2263.134 kb on + strandat 2263.506 kb on + strandat 2263.506 kb on + strandat 2264.061 kb on + strand, within BWI76_RS10710at 2264.127 kb on + strand, within BWI76_RS10710at 2264.135 kb on + strand, within BWI76_RS10710at 2264.266 kb on + strand, within BWI76_RS10710at 2264.645 kb on + strand, within BWI76_RS10710at 2264.650 kb on + strand, within BWI76_RS10710at 2264.949 kb on + strandat 2264.949 kb on + strandat 2264.990 kb on - strandat 2264.994 kb on + strandat 2265.219 kb on + strandat 2265.219 kb on + strandat 2265.260 kb on - strandat 2265.446 kb on + strand, within BWI76_RS10720at 2265.522 kb on - strand, within BWI76_RS10720at 2265.582 kb on - strand, within BWI76_RS10720at 2265.602 kb on - strand, within BWI76_RS10720

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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2,262,473 + -0.8
2,262,543 + BWI76_RS10705 0.13 -0.2
2,262,563 + BWI76_RS10705 0.15 -1.8
2,262,639 - BWI76_RS10705 0.25 +0.2
2,262,796 - BWI76_RS10705 0.46 +1.1
2,262,916 + BWI76_RS10705 0.61 -1.3
2,262,928 + BWI76_RS10705 0.63 +1.2
2,263,134 + +0.6
2,263,506 + -0.0
2,263,506 + +0.8
2,264,061 + BWI76_RS10710 0.45 +0.3
2,264,127 + BWI76_RS10710 0.50 -0.2
2,264,135 + BWI76_RS10710 0.50 +2.0
2,264,266 + BWI76_RS10710 0.59 -1.9
2,264,645 + BWI76_RS10710 0.86 -1.9
2,264,650 + BWI76_RS10710 0.86 -0.6
2,264,949 + -0.6
2,264,949 + +0.1
2,264,990 - +2.2
2,264,994 + +0.8
2,265,219 + +1.0
2,265,219 + +0.5
2,265,260 - +0.2
2,265,446 + BWI76_RS10720 0.18 +0.5
2,265,522 - BWI76_RS10720 0.24 -0.7
2,265,582 - BWI76_RS10720 0.28 +0.4
2,265,602 - BWI76_RS10720 0.30 +0.1

Or see this region's nucleotide sequence