Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09680 and BWI76_RS09685 are separated by 10 nucleotides BWI76_RS09685 and BWI76_RS09690 are separated by 1 nucleotides BWI76_RS09690 and BWI76_RS09695 are separated by 274 nucleotides
BWI76_RS09680: BWI76_RS09680 - dimethyl sulfoxide reductase subunit A, at 2,028,693 to 2,031,131
_RS09680
BWI76_RS09685: BWI76_RS09685 - dimethylsulfoxide reductase, chain B, at 2,031,142 to 2,031,759
_RS09685
BWI76_RS09690: BWI76_RS09690 - dimethyl sulfoxide reductase, at 2,031,761 to 2,032,624
_RS09690
BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047
_RS09695
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-1
0
1
2 at 2030.994 kb on - strand at 2030.998 kb on - strand at 2030.998 kb on - strand at 2031.012 kb on - strand at 2031.140 kb on - strand at 2031.752 kb on - strand at 2031.861 kb on - strand, within BWI76_RS09690 at 2032.470 kb on - strand, within BWI76_RS09690 at 2032.503 kb on - strand, within BWI76_RS09690 at 2032.643 kb on + strand at 2032.881 kb on + strand at 2032.889 kb on + strand at 2032.906 kb on + strand at 2032.920 kb on + strand at 2033.157 kb on + strand, within BWI76_RS09695 at 2033.255 kb on + strand, within BWI76_RS09695 at 2033.485 kb on + strand, within BWI76_RS09695
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 2,030,994 - -1.6 2,030,998 - +0.2 2,030,998 - +0.0 2,031,012 - +0.1 2,031,140 - +1.4 2,031,752 - +0.7 2,031,861 - BWI76_RS09690 0.12 +1.3 2,032,470 - BWI76_RS09690 0.82 +0.8 2,032,503 - BWI76_RS09690 0.86 +2.3 2,032,643 + +0.8 2,032,881 + +0.7 2,032,889 + +0.4 2,032,906 + -0.0 2,032,920 + +0.0 2,033,157 + BWI76_RS09695 0.22 -1.0 2,033,255 + BWI76_RS09695 0.31 +0.8 2,033,485 + BWI76_RS09695 0.51 +0.1
Or see this region's nucleotide sequence