Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09475 and BWI76_RS09480 are separated by 57 nucleotides BWI76_RS09480 and BWI76_RS09485 are separated by 42 nucleotides BWI76_RS09485 and BWI76_RS09490 are separated by 78 nucleotides BWI76_RS09490 and BWI76_RS09495 overlap by 4 nucleotides
BWI76_RS09475: BWI76_RS09475 - putrescine ABC transporter permease PotI, at 1,983,885 to 1,984,730
_RS09475
BWI76_RS09480: BWI76_RS09480 - hypothetical protein, at 1,984,788 to 1,985,276
_RS09480
BWI76_RS09485: BWI76_RS09485 - 23S rRNA (uracil(747)-C(5))-methyltransferase, at 1,985,319 to 1,986,449
_RS09485
BWI76_RS09490: BWI76_RS09490 - DNA-binding response regulator, at 1,986,528 to 1,987,244
_RS09490
BWI76_RS09495: BWI76_RS09495 - sensor histidine kinase, at 1,987,241 to 1,988,713
_RS09495
Position (kb) 1985
1986
1987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1984.331 kb on + strand, within BWI76_RS09475 at 1984.339 kb on - strand, within BWI76_RS09475 at 1984.378 kb on + strand, within BWI76_RS09475 at 1984.495 kb on + strand, within BWI76_RS09475 at 1984.503 kb on - strand, within BWI76_RS09475 at 1984.710 kb on - strand at 1984.777 kb on - strand at 1984.847 kb on - strand, within BWI76_RS09480 at 1984.859 kb on + strand, within BWI76_RS09480 at 1984.973 kb on - strand, within BWI76_RS09480 at 1984.973 kb on - strand, within BWI76_RS09480 at 1985.132 kb on + strand, within BWI76_RS09480 at 1985.196 kb on - strand, within BWI76_RS09480 at 1985.279 kb on + strand at 1985.455 kb on - strand, within BWI76_RS09485 at 1985.681 kb on + strand, within BWI76_RS09485 at 1985.690 kb on - strand, within BWI76_RS09485 at 1985.776 kb on - strand, within BWI76_RS09485 at 1986.046 kb on - strand, within BWI76_RS09485 at 1986.063 kb on - strand, within BWI76_RS09485 at 1986.350 kb on - strand at 1986.420 kb on + strand at 1986.548 kb on + strand at 1986.970 kb on + strand, within BWI76_RS09490 at 1986.970 kb on + strand, within BWI76_RS09490 at 1987.433 kb on - strand, within BWI76_RS09495
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,984,331 + BWI76_RS09475 0.53 +0.8 1,984,339 - BWI76_RS09475 0.54 +0.2 1,984,378 + BWI76_RS09475 0.58 +1.4 1,984,495 + BWI76_RS09475 0.72 +0.5 1,984,503 - BWI76_RS09475 0.73 +1.2 1,984,710 - -2.0 1,984,777 - +0.3 1,984,847 - BWI76_RS09480 0.12 +0.0 1,984,859 + BWI76_RS09480 0.15 -2.1 1,984,973 - BWI76_RS09480 0.38 +1.4 1,984,973 - BWI76_RS09480 0.38 -0.4 1,985,132 + BWI76_RS09480 0.70 +0.5 1,985,196 - BWI76_RS09480 0.83 -1.8 1,985,279 + +0.1 1,985,455 - BWI76_RS09485 0.12 +0.6 1,985,681 + BWI76_RS09485 0.32 +1.2 1,985,690 - BWI76_RS09485 0.33 +1.0 1,985,776 - BWI76_RS09485 0.40 +2.2 1,986,046 - BWI76_RS09485 0.64 -2.8 1,986,063 - BWI76_RS09485 0.66 +0.9 1,986,350 - +0.6 1,986,420 + -0.2 1,986,548 + +0.5 1,986,970 + BWI76_RS09490 0.62 +0.8 1,986,970 + BWI76_RS09490 0.62 -1.0 1,987,433 - BWI76_RS09495 0.13 -0.0
Or see this region's nucleotide sequence