Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09010 and BWI76_RS09015 are separated by 109 nucleotides BWI76_RS09015 and BWI76_RS09020 are separated by 151 nucleotides
BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795
_RS09010
BWI76_RS09015: BWI76_RS09015 - aldo/keto reductase, at 1,898,905 to 1,899,945
_RS09015
BWI76_RS09020: BWI76_RS09020 - 6-phospho-beta-glucosidase, at 1,900,097 to 1,901,473
_RS09020
Position (kb) 1898
1899
1900 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1898.002 kb on - strand, within BWI76_RS09010 at 1898.018 kb on - strand, within BWI76_RS09010 at 1898.140 kb on + strand, within BWI76_RS09010 at 1898.222 kb on - strand, within BWI76_RS09010 at 1898.227 kb on - strand, within BWI76_RS09010 at 1898.343 kb on - strand, within BWI76_RS09010 at 1898.771 kb on - strand at 1898.865 kb on - strand at 1898.865 kb on - strand at 1898.950 kb on - strand at 1899.119 kb on - strand, within BWI76_RS09015 at 1899.242 kb on + strand, within BWI76_RS09015 at 1899.754 kb on + strand, within BWI76_RS09015 at 1899.772 kb on - strand, within BWI76_RS09015 at 1900.696 kb on + strand, within BWI76_RS09020 at 1900.717 kb on + strand, within BWI76_RS09020 at 1900.762 kb on + strand, within BWI76_RS09020 at 1900.762 kb on + strand, within BWI76_RS09020 at 1900.784 kb on - strand, within BWI76_RS09020 at 1900.784 kb on - strand, within BWI76_RS09020 at 1900.858 kb on + strand, within BWI76_RS09020
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,898,002 - BWI76_RS09010 0.28 -0.0 1,898,018 - BWI76_RS09010 0.30 +1.0 1,898,140 + BWI76_RS09010 0.41 +1.7 1,898,222 - BWI76_RS09010 0.48 -0.2 1,898,227 - BWI76_RS09010 0.49 +0.9 1,898,343 - BWI76_RS09010 0.59 +0.4 1,898,771 - +1.0 1,898,865 - -1.1 1,898,865 - -3.5 1,898,950 - -1.1 1,899,119 - BWI76_RS09015 0.21 +0.9 1,899,242 + BWI76_RS09015 0.32 -0.6 1,899,754 + BWI76_RS09015 0.82 +0.8 1,899,772 - BWI76_RS09015 0.83 +1.6 1,900,696 + BWI76_RS09020 0.44 +0.8 1,900,717 + BWI76_RS09020 0.45 -1.4 1,900,762 + BWI76_RS09020 0.48 -2.4 1,900,762 + BWI76_RS09020 0.48 +0.1 1,900,784 - BWI76_RS09020 0.50 -0.7 1,900,784 - BWI76_RS09020 0.50 -0.4 1,900,858 + BWI76_RS09020 0.55 +0.8
Or see this region's nucleotide sequence