Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08850 and BWI76_RS08855 overlap by 4 nucleotides BWI76_RS08855 and BWI76_RS08860 are separated by 143 nucleotides BWI76_RS08860 and BWI76_RS08865 overlap by 39 nucleotides
BWI76_RS08850: BWI76_RS08850 - cardiolipin synthase B, at 1,863,127 to 1,864,371
_RS08850
BWI76_RS08855: BWI76_RS08855 - endonuclease/exonuclease/phosphatase, at 1,864,368 to 1,865,117
_RS08855
BWI76_RS08860: BWI76_RS08860 - hypothetical protein, at 1,865,261 to 1,865,671
_RS08860
BWI76_RS08865: BWI76_RS08865 - ABC transporter inner membrane, at 1,865,633 to 1,866,739
_RS08865
Position (kb) 1864
1865
1866 Strain fitness (log2 ratio) -1
0
1
2 at 1863.499 kb on - strand, within BWI76_RS08850 at 1864.152 kb on + strand, within BWI76_RS08850 at 1864.207 kb on - strand, within BWI76_RS08850 at 1864.490 kb on - strand, within BWI76_RS08855 at 1864.572 kb on - strand, within BWI76_RS08855 at 1864.634 kb on + strand, within BWI76_RS08855 at 1865.569 kb on - strand, within BWI76_RS08860
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,863,499 - BWI76_RS08850 0.30 +1.3 1,864,152 + BWI76_RS08850 0.82 +0.6 1,864,207 - BWI76_RS08850 0.87 +0.6 1,864,490 - BWI76_RS08855 0.16 +1.1 1,864,572 - BWI76_RS08855 0.27 +0.5 1,864,634 + BWI76_RS08855 0.35 +2.7 1,865,569 - BWI76_RS08860 0.75 +1.6
Or see this region's nucleotide sequence