Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08120 and BWI76_RS08125 are separated by 98 nucleotides BWI76_RS08125 and BWI76_RS08130 overlap by 4 nucleotides BWI76_RS08130 and BWI76_RS08135 are separated by 143 nucleotides
BWI76_RS08120: BWI76_RS08120 - cobalt transporter, at 1,721,499 to 1,722,377
_RS08120
BWI76_RS08125: BWI76_RS08125 - rRNA maturation RNase YbeY, at 1,722,476 to 1,722,943
_RS08125
BWI76_RS08130: BWI76_RS08130 - nucleoside triphosphate hydrolase, at 1,722,940 to 1,723,986
_RS08130
BWI76_RS08135: BWI76_RS08135 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,724,130 to 1,725,554
_RS08135
Position (kb) 1722
1723
1724 Strain fitness (log2 ratio) -1
0
1
2 at 1722.199 kb on - strand, within BWI76_RS08120 at 1722.482 kb on - strand at 1723.209 kb on - strand, within BWI76_RS08130 at 1723.998 kb on - strand at 1724.647 kb on - strand, within BWI76_RS08135 at 1724.956 kb on - strand, within BWI76_RS08135
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,722,199 - BWI76_RS08120 0.80 +2.5 1,722,482 - +0.9 1,723,209 - BWI76_RS08130 0.26 -0.3 1,723,998 - +0.5 1,724,647 - BWI76_RS08135 0.36 -1.4 1,724,956 - BWI76_RS08135 0.58 -0.7
Or see this region's nucleotide sequence