Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08115

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08110 and BWI76_RS08115 are separated by 356 nucleotidesBWI76_RS08115 and BWI76_RS08120 are separated by 22 nucleotidesBWI76_RS08120 and BWI76_RS08125 are separated by 98 nucleotides BWI76_RS08110: BWI76_RS08110 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,718,670 to 1,719,581 _RS08110 BWI76_RS08115: BWI76_RS08115 - apolipoprotein N-acyltransferase, at 1,719,938 to 1,721,476 _RS08115 BWI76_RS08120: BWI76_RS08120 - cobalt transporter, at 1,721,499 to 1,722,377 _RS08120 BWI76_RS08125: BWI76_RS08125 - rRNA maturation RNase YbeY, at 1,722,476 to 1,722,943 _RS08125 Position (kb) 1719 1720 1721 1722Strain fitness (log2 ratio) -1 0 1 2 3 4at 1719.091 kb on - strand, within BWI76_RS08110at 1719.115 kb on + strand, within BWI76_RS08110at 1719.115 kb on + strand, within BWI76_RS08110at 1719.377 kb on + strand, within BWI76_RS08110at 1721.755 kb on - strand, within BWI76_RS08120at 1721.839 kb on - strand, within BWI76_RS08120at 1722.199 kb on - strand, within BWI76_RS08120

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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1,719,091 - BWI76_RS08110 0.46 -1.1
1,719,115 + BWI76_RS08110 0.49 +2.0
1,719,115 + BWI76_RS08110 0.49 -0.9
1,719,377 + BWI76_RS08110 0.78 -1.4
1,721,755 - BWI76_RS08120 0.29 +3.8
1,721,839 - BWI76_RS08120 0.39 +2.2
1,722,199 - BWI76_RS08120 0.80 +2.5

Or see this region's nucleotide sequence