Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07825 and BWI76_RS07830 are separated by 46 nucleotides BWI76_RS07830 and BWI76_RS07835 are separated by 25 nucleotides
BWI76_RS07825: BWI76_RS07825 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,659,246 to 1,660,274
_RS07825
BWI76_RS07830: BWI76_RS07830 - 3-phytase, at 1,660,321 to 1,661,589
_RS07830
BWI76_RS07835: BWI76_RS07835 - MFS transporter, at 1,661,615 to 1,662,976
_RS07835
Position (kb) 1660
1661
1662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1659.344 kb on + strand at 1659.450 kb on + strand, within BWI76_RS07825 at 1659.536 kb on - strand, within BWI76_RS07825 at 1659.831 kb on - strand, within BWI76_RS07825 at 1659.831 kb on - strand, within BWI76_RS07825 at 1659.831 kb on - strand, within BWI76_RS07825 at 1659.885 kb on - strand, within BWI76_RS07825 at 1659.920 kb on - strand, within BWI76_RS07825 at 1660.053 kb on - strand, within BWI76_RS07825 at 1660.136 kb on - strand, within BWI76_RS07825 at 1660.206 kb on + strand at 1660.236 kb on - strand at 1660.238 kb on + strand at 1660.408 kb on - strand at 1660.733 kb on + strand, within BWI76_RS07830 at 1661.173 kb on - strand, within BWI76_RS07830 at 1661.307 kb on + strand, within BWI76_RS07830 at 1661.515 kb on + strand at 1661.606 kb on + strand at 1662.003 kb on + strand, within BWI76_RS07835 at 1662.003 kb on + strand, within BWI76_RS07835 at 1662.013 kb on - strand, within BWI76_RS07835 at 1662.147 kb on + strand, within BWI76_RS07835
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,659,344 + -0.1 1,659,450 + BWI76_RS07825 0.20 +1.0 1,659,536 - BWI76_RS07825 0.28 +0.6 1,659,831 - BWI76_RS07825 0.57 -1.7 1,659,831 - BWI76_RS07825 0.57 +1.7 1,659,831 - BWI76_RS07825 0.57 +0.6 1,659,885 - BWI76_RS07825 0.62 +1.8 1,659,920 - BWI76_RS07825 0.66 +0.5 1,660,053 - BWI76_RS07825 0.78 -1.1 1,660,136 - BWI76_RS07825 0.86 +0.8 1,660,206 + +1.6 1,660,236 - +0.1 1,660,238 + +0.8 1,660,408 - -1.6 1,660,733 + BWI76_RS07830 0.32 -0.9 1,661,173 - BWI76_RS07830 0.67 -1.8 1,661,307 + BWI76_RS07830 0.78 +0.8 1,661,515 + -1.0 1,661,606 + -0.0 1,662,003 + BWI76_RS07835 0.28 -0.1 1,662,003 + BWI76_RS07835 0.28 +1.0 1,662,013 - BWI76_RS07835 0.29 -0.4 1,662,147 + BWI76_RS07835 0.39 +0.2
Or see this region's nucleotide sequence