Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07505 and BWI76_RS07510 are separated by 173 nucleotides BWI76_RS07510 and BWI76_RS07515 are separated by 52 nucleotides
BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781
_RS07505
BWI76_RS07510: BWI76_RS07510 - hypothetical protein, at 1,588,955 to 1,589,674
_RS07510
BWI76_RS07515: BWI76_RS07515 - glutamate--cysteine ligase, at 1,589,727 to 1,590,842
_RS07515
Position (kb) 1588
1589
1590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1587.998 kb on + strand, within BWI76_RS07505 at 1588.348 kb on - strand, within BWI76_RS07505 at 1588.360 kb on + strand, within BWI76_RS07505 at 1588.400 kb on + strand, within BWI76_RS07505 at 1588.419 kb on + strand, within BWI76_RS07505 at 1588.639 kb on + strand at 1588.679 kb on + strand at 1588.687 kb on - strand at 1588.804 kb on - strand at 1588.880 kb on + strand at 1589.081 kb on - strand, within BWI76_RS07510 at 1589.166 kb on + strand, within BWI76_RS07510 at 1589.166 kb on + strand, within BWI76_RS07510 at 1589.233 kb on + strand, within BWI76_RS07510 at 1589.691 kb on + strand at 1589.716 kb on - strand at 1589.732 kb on - strand at 1589.846 kb on + strand, within BWI76_RS07515 at 1589.991 kb on - strand, within BWI76_RS07515 at 1590.009 kb on - strand, within BWI76_RS07515 at 1590.213 kb on - strand, within BWI76_RS07515 at 1590.588 kb on + strand, within BWI76_RS07515
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,587,998 + BWI76_RS07505 0.75 -3.6 1,588,348 - BWI76_RS07505 0.86 +0.9 1,588,360 + BWI76_RS07505 0.86 +1.1 1,588,400 + BWI76_RS07505 0.88 -1.3 1,588,419 + BWI76_RS07505 0.88 -1.1 1,588,639 + -1.1 1,588,679 + +1.1 1,588,687 - -1.1 1,588,804 - +0.1 1,588,880 + -0.0 1,589,081 - BWI76_RS07510 0.17 +2.7 1,589,166 + BWI76_RS07510 0.29 +0.9 1,589,166 + BWI76_RS07510 0.29 +0.3 1,589,233 + BWI76_RS07510 0.39 +0.4 1,589,691 + +0.2 1,589,716 - -0.4 1,589,732 - +0.4 1,589,846 + BWI76_RS07515 0.11 -0.3 1,589,991 - BWI76_RS07515 0.24 +0.1 1,590,009 - BWI76_RS07515 0.25 -2.4 1,590,213 - BWI76_RS07515 0.44 +0.9 1,590,588 + BWI76_RS07515 0.77 +1.1
Or see this region's nucleotide sequence