Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06965 and BWI76_RS06970 are separated by 106 nucleotides BWI76_RS06970 and BWI76_RS06975 are separated by 87 nucleotides
BWI76_RS06965: BWI76_RS06965 - membrane protein, at 1,462,636 to 1,463,781
_RS06965
BWI76_RS06970: BWI76_RS06970 - selenophosphate-dependent tRNA 2-selenouridine synthase, at 1,463,888 to 1,464,973
_RS06970
BWI76_RS06975: BWI76_RS06975 - DNA-binding transcriptional activator AllS, at 1,465,061 to 1,465,984
_RS06975
Position (kb) 1463
1464
1465 Strain fitness (log2 ratio) -1
0
1 at 1462.891 kb on - strand, within BWI76_RS06965 at 1462.938 kb on - strand, within BWI76_RS06965 at 1462.991 kb on - strand, within BWI76_RS06965 at 1463.012 kb on - strand, within BWI76_RS06965 at 1463.012 kb on - strand, within BWI76_RS06965 at 1463.061 kb on - strand, within BWI76_RS06965 at 1463.422 kb on + strand, within BWI76_RS06965 at 1463.685 kb on + strand at 1463.775 kb on + strand at 1463.810 kb on + strand at 1463.873 kb on - strand at 1463.889 kb on - strand at 1464.424 kb on + strand, within BWI76_RS06970 at 1464.550 kb on - strand, within BWI76_RS06970 at 1464.601 kb on + strand, within BWI76_RS06970 at 1464.622 kb on - strand, within BWI76_RS06970 at 1464.637 kb on - strand, within BWI76_RS06970 at 1464.846 kb on + strand, within BWI76_RS06970 at 1464.925 kb on + strand at 1464.982 kb on + strand at 1465.048 kb on - strand at 1465.074 kb on - strand at 1465.141 kb on - strand at 1465.143 kb on + strand at 1465.208 kb on - strand, within BWI76_RS06975 at 1465.347 kb on + strand, within BWI76_RS06975 at 1465.372 kb on + strand, within BWI76_RS06975 at 1465.542 kb on - strand, within BWI76_RS06975 at 1465.646 kb on + strand, within BWI76_RS06975 at 1465.925 kb on + strand at 1465.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,462,891 - BWI76_RS06965 0.22 +0.2 1,462,938 - BWI76_RS06965 0.26 +0.6 1,462,991 - BWI76_RS06965 0.31 +1.4 1,463,012 - BWI76_RS06965 0.33 +0.1 1,463,012 - BWI76_RS06965 0.33 +0.7 1,463,061 - BWI76_RS06965 0.37 -0.5 1,463,422 + BWI76_RS06965 0.69 -0.4 1,463,685 + -0.4 1,463,775 + -0.4 1,463,810 + -0.1 1,463,873 - -0.1 1,463,889 - -1.2 1,464,424 + BWI76_RS06970 0.49 +1.1 1,464,550 - BWI76_RS06970 0.61 +1.2 1,464,601 + BWI76_RS06970 0.66 +0.5 1,464,622 - BWI76_RS06970 0.68 +0.4 1,464,637 - BWI76_RS06970 0.69 +0.3 1,464,846 + BWI76_RS06970 0.88 +1.1 1,464,925 + +0.7 1,464,982 + +0.2 1,465,048 - +0.2 1,465,074 - -0.5 1,465,141 - +1.4 1,465,143 + -0.9 1,465,208 - BWI76_RS06975 0.16 +0.1 1,465,347 + BWI76_RS06975 0.31 -0.3 1,465,372 + BWI76_RS06975 0.34 +0.8 1,465,542 - BWI76_RS06975 0.52 -0.4 1,465,646 + BWI76_RS06975 0.63 -0.1 1,465,925 + +0.9 1,465,928 - +0.3
Or see this region's nucleotide sequence