Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05885 and BWI76_RS05890 are separated by 214 nucleotides BWI76_RS05890 and BWI76_RS05895 are separated by 144 nucleotides
BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896
_RS05885
BWI76_RS05890: BWI76_RS05890 - haloacid dehalogenase, at 1,238,111 to 1,238,773
_RS05890
BWI76_RS05895: BWI76_RS05895 - phosphonate ABC transporter, permease protein PhnE, at 1,238,918 to 1,239,799
_RS05895
Position (kb) 1238
1239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1237.174 kb on - strand, within BWI76_RS05885 at 1237.282 kb on - strand, within BWI76_RS05885 at 1237.538 kb on + strand, within BWI76_RS05885 at 1237.680 kb on + strand, within BWI76_RS05885 at 1237.883 kb on - strand at 1238.123 kb on - strand at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.311 kb on + strand, within BWI76_RS05890 at 1238.511 kb on + strand, within BWI76_RS05890 at 1238.568 kb on + strand, within BWI76_RS05890 at 1238.592 kb on + strand, within BWI76_RS05890 at 1238.706 kb on + strand, within BWI76_RS05890 at 1238.843 kb on - strand at 1238.903 kb on - strand at 1238.925 kb on + strand at 1239.027 kb on - strand, within BWI76_RS05895 at 1239.207 kb on + strand, within BWI76_RS05895 at 1239.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,237,174 - BWI76_RS05885 0.11 -1.6 1,237,282 - BWI76_RS05885 0.24 +0.9 1,237,538 + BWI76_RS05885 0.56 -2.7 1,237,680 + BWI76_RS05885 0.73 +0.5 1,237,883 - +1.1 1,238,123 - -0.1 1,238,192 - BWI76_RS05890 0.12 -0.8 1,238,192 - BWI76_RS05890 0.12 +0.4 1,238,192 - BWI76_RS05890 0.12 +0.6 1,238,311 + BWI76_RS05890 0.30 +0.2 1,238,511 + BWI76_RS05890 0.60 +0.1 1,238,568 + BWI76_RS05890 0.69 +1.8 1,238,592 + BWI76_RS05890 0.73 +0.4 1,238,706 + BWI76_RS05890 0.90 +1.3 1,238,843 - +0.4 1,238,903 - +1.5 1,238,925 + +0.3 1,239,027 - BWI76_RS05895 0.12 -0.0 1,239,207 + BWI76_RS05895 0.33 +0.4 1,239,711 - -0.2
Or see this region's nucleotide sequence