Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04365

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04360 and BWI76_RS04365 are separated by 29 nucleotidesBWI76_RS04365 and BWI76_RS04370 are separated by 279 nucleotides BWI76_RS04360: BWI76_RS04360 - ribonucleoside hydrolase RihC, at 897,886 to 898,800 _RS04360 BWI76_RS04365: BWI76_RS04365 - LysR family transcriptional regulator, at 898,830 to 899,768 _RS04365 BWI76_RS04370: BWI76_RS04370 - FldA family protein, at 900,048 to 901,103 _RS04370 Position (kb) 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 897.853 kb on + strandat 897.853 kb on + strandat 898.063 kb on - strand, within BWI76_RS04360at 898.115 kb on - strand, within BWI76_RS04360at 898.350 kb on + strand, within BWI76_RS04360at 898.453 kb on - strandat 898.558 kb on + strand, within BWI76_RS04360at 898.628 kb on + strand, within BWI76_RS04360at 898.834 kb on - strandat 898.953 kb on + strand, within BWI76_RS04365at 899.063 kb on - strand, within BWI76_RS04365at 899.113 kb on - strand, within BWI76_RS04365at 899.193 kb on + strand, within BWI76_RS04365at 899.199 kb on + strand, within BWI76_RS04365at 899.210 kb on - strand, within BWI76_RS04365at 899.267 kb on - strand, within BWI76_RS04365at 899.296 kb on - strand, within BWI76_RS04365at 899.346 kb on + strand, within BWI76_RS04365at 899.355 kb on - strand, within BWI76_RS04365at 899.369 kb on - strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strandat 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.372 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.374 kb on + strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.378 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.380 kb on - strand, within BWI76_RS04365at 899.382 kb on - strand, within BWI76_RS04365at 899.475 kb on + strand, within BWI76_RS04365at 899.478 kb on - strand, within BWI76_RS04365at 899.480 kb on + strand, within BWI76_RS04365at 899.480 kb on + strand, within BWI76_RS04365at 899.512 kb on + strand, within BWI76_RS04365at 899.519 kb on + strandat 899.534 kb on + strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.562 kb on - strand, within BWI76_RS04365at 899.622 kb on - strand, within BWI76_RS04365at 899.624 kb on + strand, within BWI76_RS04365at 899.664 kb on + strand, within BWI76_RS04365at 899.674 kb on + strand, within BWI76_RS04365at 899.678 kb on + strandat 899.678 kb on + strandat 899.678 kb on + strandat 899.678 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.686 kb on - strandat 899.688 kb on + strandat 899.688 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.691 kb on - strandat 899.701 kb on + strandat 899.723 kb on + strandat 899.723 kb on - strandat 899.723 kb on - strandat 899.731 kb on - strandat 899.731 kb on - strandat 899.776 kb on + strandat 899.781 kb on - strandat 899.784 kb on - strandat 899.784 kb on - strandat 899.786 kb on - strandat 899.792 kb on + strandat 899.805 kb on - strandat 899.805 kb on - strandat 899.901 kb on - strandat 899.931 kb on - strandat 899.999 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.004 kb on + strandat 900.012 kb on - strandat 900.012 kb on - strandat 900.012 kb on - strandat 900.045 kb on + strandat 900.062 kb on - strandat 900.066 kb on + strandat 900.074 kb on - strandat 900.164 kb on - strand, within BWI76_RS04370at 900.173 kb on - strand, within BWI76_RS04370at 900.194 kb on + strand, within BWI76_RS04370at 900.198 kb on + strand, within BWI76_RS04370at 900.198 kb on + strand, within BWI76_RS04370at 900.206 kb on - strand, within BWI76_RS04370at 900.210 kb on + strand, within BWI76_RS04370at 900.218 kb on - strand, within BWI76_RS04370at 900.225 kb on - strand, within BWI76_RS04370at 900.225 kb on - strand, within BWI76_RS04370at 900.246 kb on - strand, within BWI76_RS04370at 900.279 kb on + strandat 900.305 kb on + strand, within BWI76_RS04370at 900.315 kb on + strand, within BWI76_RS04370at 900.323 kb on - strand, within BWI76_RS04370at 900.328 kb on + strand, within BWI76_RS04370at 900.330 kb on + strand, within BWI76_RS04370at 900.330 kb on + strand, within BWI76_RS04370at 900.352 kb on + strand, within BWI76_RS04370at 900.365 kb on + strand, within BWI76_RS04370at 900.370 kb on + strand, within BWI76_RS04370at 900.447 kb on - strand, within BWI76_RS04370at 900.447 kb on - strand, within BWI76_RS04370at 900.461 kb on + strand, within BWI76_RS04370at 900.474 kb on - strand, within BWI76_RS04370at 900.489 kb on - strand, within BWI76_RS04370at 900.501 kb on + strand, within BWI76_RS04370at 900.509 kb on - strand, within BWI76_RS04370at 900.551 kb on + strand, within BWI76_RS04370at 900.564 kb on - strand, within BWI76_RS04370at 900.578 kb on + strand, within BWI76_RS04370at 900.604 kb on + strand, within BWI76_RS04370at 900.604 kb on + strand, within BWI76_RS04370at 900.604 kb on + strand, within BWI76_RS04370at 900.612 kb on - strand, within BWI76_RS04370at 900.612 kb on - strand, within BWI76_RS04370at 900.619 kb on + strand, within BWI76_RS04370at 900.619 kb on + strand, within BWI76_RS04370at 900.622 kb on - strand, within BWI76_RS04370at 900.624 kb on - strand, within BWI76_RS04370at 900.627 kb on - strand, within BWI76_RS04370at 900.635 kb on + strand, within BWI76_RS04370at 900.643 kb on - strand, within BWI76_RS04370at 900.645 kb on - strand, within BWI76_RS04370at 900.645 kb on - strand, within BWI76_RS04370at 900.649 kb on + strandat 900.657 kb on - strand, within BWI76_RS04370at 900.665 kb on + strand, within BWI76_RS04370at 900.704 kb on + strand, within BWI76_RS04370at 900.735 kb on + strand, within BWI76_RS04370at 900.735 kb on + strand, within BWI76_RS04370at 900.743 kb on - strand, within BWI76_RS04370at 900.755 kb on + strand, within BWI76_RS04370at 900.756 kb on + strand, within BWI76_RS04370at 900.762 kb on + strand, within BWI76_RS04370at 900.764 kb on - strand, within BWI76_RS04370

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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897,853 + -0.0
897,853 + -0.8
898,063 - BWI76_RS04360 0.19 -0.8
898,115 - BWI76_RS04360 0.25 -0.4
898,350 + BWI76_RS04360 0.51 +0.3
898,453 - +0.9
898,558 + BWI76_RS04360 0.73 +1.0
898,628 + BWI76_RS04360 0.81 +1.3
898,834 - -3.3
898,953 + BWI76_RS04365 0.13 +0.5
899,063 - BWI76_RS04365 0.25 +1.3
899,113 - BWI76_RS04365 0.30 -1.7
899,193 + BWI76_RS04365 0.39 -0.1
899,199 + BWI76_RS04365 0.39 +2.2
899,210 - BWI76_RS04365 0.40 -0.8
899,267 - BWI76_RS04365 0.47 -2.3
899,296 - BWI76_RS04365 0.50 +0.4
899,346 + BWI76_RS04365 0.55 -1.2
899,355 - BWI76_RS04365 0.56 +0.5
899,369 - BWI76_RS04365 0.57 +0.3
899,372 + BWI76_RS04365 0.58 -0.7
899,372 + BWI76_RS04365 0.58 +0.9
899,372 + +0.9
899,372 + BWI76_RS04365 0.58 -2.8
899,372 + BWI76_RS04365 0.58 -0.1
899,372 + BWI76_RS04365 0.58 -0.1
899,374 + BWI76_RS04365 0.58 -0.5
899,374 + BWI76_RS04365 0.58 -1.3
899,374 + BWI76_RS04365 0.58 -0.1
899,378 - BWI76_RS04365 0.58 -1.0
899,378 - BWI76_RS04365 0.58 -0.1
899,378 - BWI76_RS04365 0.58 -1.0
899,380 - BWI76_RS04365 0.59 -3.1
899,380 - BWI76_RS04365 0.59 -1.0
899,380 - BWI76_RS04365 0.59 -2.6
899,380 - BWI76_RS04365 0.59 +0.9
899,380 - BWI76_RS04365 0.59 -2.1
899,380 - BWI76_RS04365 0.59 -0.5
899,382 - BWI76_RS04365 0.59 +0.9
899,475 + BWI76_RS04365 0.69 +0.3
899,478 - BWI76_RS04365 0.69 -0.8
899,480 + BWI76_RS04365 0.69 -1.1
899,480 + BWI76_RS04365 0.69 -0.1
899,512 + BWI76_RS04365 0.73 -0.1
899,519 + +1.0
899,534 + BWI76_RS04365 0.75 -0.5
899,562 - BWI76_RS04365 0.78 -0.4
899,562 - BWI76_RS04365 0.78 +1.8
899,562 - BWI76_RS04365 0.78 +0.2
899,562 - BWI76_RS04365 0.78 +1.1
899,622 - BWI76_RS04365 0.84 -3.3
899,624 + BWI76_RS04365 0.85 -0.1
899,664 + BWI76_RS04365 0.89 -2.8
899,674 + BWI76_RS04365 0.90 -0.7
899,678 + +0.5
899,678 + +0.9
899,678 + +1.6
899,678 + -0.7
899,683 + +1.8
899,683 + -2.6
899,683 + +0.9
899,683 + +0.7
899,686 - +0.3
899,688 + -0.1
899,688 - -1.4
899,691 - -0.1
899,691 - -2.7
899,691 - -0.1
899,691 - -1.4
899,691 - -1.8
899,691 - -0.7
899,691 - +0.9
899,691 - +0.7
899,701 + -1.4
899,723 + +0.9
899,723 - -1.4
899,723 - -1.4
899,731 - +0.1
899,731 - +0.4
899,776 + -2.4
899,781 - +0.8
899,784 - -0.7
899,784 - +0.5
899,786 - -3.1
899,792 + -2.3
899,805 - -1.7
899,805 - -1.7
899,901 - -0.1
899,931 - -0.7
899,999 + -0.1
900,004 + -2.8
900,004 + +2.9
900,004 + -0.8
900,004 + -2.1
900,004 + +0.7
900,004 + -1.5
900,004 + -1.1
900,012 - -0.4
900,012 - -3.3
900,012 - -0.1
900,045 + +0.2
900,062 - +0.9
900,066 + +3.2
900,074 - -0.6
900,164 - BWI76_RS04370 0.11 +0.6
900,173 - BWI76_RS04370 0.12 -3.4
900,194 + BWI76_RS04370 0.14 -2.6
900,198 + BWI76_RS04370 0.14 -2.9
900,198 + BWI76_RS04370 0.14 -0.7
900,206 - BWI76_RS04370 0.15 +0.9
900,210 + BWI76_RS04370 0.15 +1.6
900,218 - BWI76_RS04370 0.16 -0.1
900,225 - BWI76_RS04370 0.17 -2.8
900,225 - BWI76_RS04370 0.17 -0.7
900,246 - BWI76_RS04370 0.19 +1.8
900,279 + +0.9
900,305 + BWI76_RS04370 0.24 -3.4
900,315 + BWI76_RS04370 0.25 +0.0
900,323 - BWI76_RS04370 0.26 +2.2
900,328 + BWI76_RS04370 0.27 -1.4
900,330 + BWI76_RS04370 0.27 +0.4
900,330 + BWI76_RS04370 0.27 -0.1
900,352 + BWI76_RS04370 0.29 -0.6
900,365 + BWI76_RS04370 0.30 -0.7
900,370 + BWI76_RS04370 0.30 -0.1
900,447 - BWI76_RS04370 0.38 -3.0
900,447 - BWI76_RS04370 0.38 -1.4
900,461 + BWI76_RS04370 0.39 -1.9
900,474 - BWI76_RS04370 0.40 -1.1
900,489 - BWI76_RS04370 0.42 +0.8
900,501 + BWI76_RS04370 0.43 +2.5
900,509 - BWI76_RS04370 0.44 -0.1
900,551 + BWI76_RS04370 0.48 +1.2
900,564 - BWI76_RS04370 0.49 -2.9
900,578 + BWI76_RS04370 0.50 +1.5
900,604 + BWI76_RS04370 0.53 +0.9
900,604 + BWI76_RS04370 0.53 +2.2
900,604 + BWI76_RS04370 0.53 +0.2
900,612 - BWI76_RS04370 0.53 -0.1
900,612 - BWI76_RS04370 0.53 -1.7
900,619 + BWI76_RS04370 0.54 -2.7
900,619 + BWI76_RS04370 0.54 +2.0
900,622 - BWI76_RS04370 0.54 -3.0
900,624 - BWI76_RS04370 0.55 -3.6
900,627 - BWI76_RS04370 0.55 -0.3
900,635 + BWI76_RS04370 0.56 +0.2
900,643 - BWI76_RS04370 0.56 +0.3
900,645 - BWI76_RS04370 0.57 -1.9
900,645 - BWI76_RS04370 0.57 -1.7
900,649 + +2.5
900,657 - BWI76_RS04370 0.58 -0.3
900,665 + BWI76_RS04370 0.58 -1.1
900,704 + BWI76_RS04370 0.62 -1.0
900,735 + BWI76_RS04370 0.65 +0.7
900,735 + BWI76_RS04370 0.65 -1.7
900,743 - BWI76_RS04370 0.66 +0.1
900,755 + BWI76_RS04370 0.67 +0.9
900,756 + BWI76_RS04370 0.67 -1.1
900,762 + BWI76_RS04370 0.68 +1.2
900,764 - BWI76_RS04370 0.68 -2.6

Or see this region's nucleotide sequence