Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03960 and BWI76_RS03965 are separated by 16 nucleotides BWI76_RS03965 and BWI76_RS03970 overlap by 23 nucleotides BWI76_RS03970 and BWI76_RS03975 are separated by 12 nucleotides
BWI76_RS03960: BWI76_RS03960 - PTS system sorbose subfamily IIB component, at 820,027 to 820,497
_RS03960
BWI76_RS03965: BWI76_RS03965 - PTS sugar transporter, at 820,514 to 821,293
_RS03965
BWI76_RS03970: BWI76_RS03970 - PTS mannose/fructose/sorbose family transporter subunit IID, at 821,271 to 822,122
_RS03970
BWI76_RS03975: BWI76_RS03975 - glucosamine--fructose-6-phosphate aminotransferase, at 822,135 to 823,196
_RS03975
Position (kb) 821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 820.278 kb on + strand, within BWI76_RS03960 at 820.286 kb on - strand, within BWI76_RS03960 at 820.287 kb on + strand, within BWI76_RS03960 at 820.287 kb on + strand, within BWI76_RS03960 at 820.300 kb on - strand, within BWI76_RS03960 at 820.302 kb on - strand, within BWI76_RS03960 at 820.325 kb on + strand, within BWI76_RS03960 at 820.325 kb on + strand, within BWI76_RS03960 at 820.333 kb on - strand, within BWI76_RS03960 at 820.333 kb on - strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.347 kb on + strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.356 kb on - strand, within BWI76_RS03960 at 820.408 kb on - strand, within BWI76_RS03960 at 820.411 kb on + strand at 820.418 kb on - strand, within BWI76_RS03960 at 820.422 kb on + strand, within BWI76_RS03960 at 820.430 kb on - strand, within BWI76_RS03960 at 820.432 kb on + strand, within BWI76_RS03960 at 820.433 kb on + strand, within BWI76_RS03960 at 820.439 kb on + strand, within BWI76_RS03960 at 820.440 kb on - strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on - strand, within BWI76_RS03960 at 820.447 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.456 kb on + strand at 820.463 kb on - strand at 820.476 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.526 kb on + strand at 820.534 kb on - strand at 820.544 kb on - strand at 820.544 kb on - strand at 820.620 kb on + strand, within BWI76_RS03965 at 820.625 kb on + strand, within BWI76_RS03965 at 820.628 kb on - strand, within BWI76_RS03965 at 820.721 kb on - strand, within BWI76_RS03965 at 820.809 kb on - strand, within BWI76_RS03965 at 820.843 kb on + strand, within BWI76_RS03965 at 820.882 kb on - strand, within BWI76_RS03965 at 820.892 kb on - strand, within BWI76_RS03965 at 820.965 kb on - strand, within BWI76_RS03965 at 821.214 kb on + strand, within BWI76_RS03965 at 821.327 kb on - strand at 821.357 kb on + strand, within BWI76_RS03970 at 821.450 kb on + strand, within BWI76_RS03970 at 821.703 kb on - strand, within BWI76_RS03970 at 821.723 kb on + strand, within BWI76_RS03970 at 821.802 kb on + strand, within BWI76_RS03970 at 821.817 kb on - strand, within BWI76_RS03970 at 821.866 kb on - strand, within BWI76_RS03970 at 821.881 kb on + strand, within BWI76_RS03970 at 822.038 kb on + strand at 822.161 kb on - strand at 822.379 kb on + strand, within BWI76_RS03975 at 822.440 kb on + strand, within BWI76_RS03975 at 822.501 kb on - strand, within BWI76_RS03975 at 822.644 kb on - strand, within BWI76_RS03975 at 822.727 kb on + strand, within BWI76_RS03975 at 822.964 kb on - strand, within BWI76_RS03975 at 822.966 kb on - strand, within BWI76_RS03975 at 823.008 kb on - strand, within BWI76_RS03975 at 823.008 kb on - strand, within BWI76_RS03975 at 823.014 kb on - strand, within BWI76_RS03975 at 823.043 kb on + strand, within BWI76_RS03975 at 823.044 kb on + strand, within BWI76_RS03975 at 823.044 kb on + strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.062 kb on - strand, within BWI76_RS03975 at 823.062 kb on - strand, within BWI76_RS03975 at 823.063 kb on + strand, within BWI76_RS03975 at 823.069 kb on + strand, within BWI76_RS03975 at 823.071 kb on - strand, within BWI76_RS03975 at 823.085 kb on - strand, within BWI76_RS03975 at 823.088 kb on + strand, within BWI76_RS03975 at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.101 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.109 kb on + strand at 823.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 820,278 + BWI76_RS03960 0.53 -0.9 820,286 - BWI76_RS03960 0.55 +0.1 820,287 + BWI76_RS03960 0.55 -2.0 820,287 + BWI76_RS03960 0.55 -2.6 820,300 - BWI76_RS03960 0.58 -0.3 820,302 - BWI76_RS03960 0.58 -2.8 820,325 + BWI76_RS03960 0.63 +1.0 820,325 + BWI76_RS03960 0.63 -1.9 820,333 - BWI76_RS03960 0.65 +1.0 820,333 - BWI76_RS03960 0.65 -3.0 820,341 + BWI76_RS03960 0.67 -0.3 820,341 + BWI76_RS03960 0.67 +1.8 820,341 + BWI76_RS03960 0.67 +1.1 820,341 + BWI76_RS03960 0.67 +0.4 820,341 + BWI76_RS03960 0.67 -2.0 820,341 + BWI76_RS03960 0.67 +0.6 820,346 + BWI76_RS03960 0.68 +1.5 820,346 + BWI76_RS03960 0.68 -2.8 820,346 + BWI76_RS03960 0.68 -0.3 820,346 + BWI76_RS03960 0.68 +0.1 820,346 + BWI76_RS03960 0.68 -0.9 820,346 + BWI76_RS03960 0.68 +0.4 820,346 + BWI76_RS03960 0.68 -1.3 820,346 + BWI76_RS03960 0.68 -1.8 820,346 + BWI76_RS03960 0.68 -1.3 820,346 + BWI76_RS03960 0.68 +0.3 820,346 + BWI76_RS03960 0.68 +0.6 820,347 + BWI76_RS03960 0.68 +0.4 820,349 - BWI76_RS03960 0.68 +1.1 820,349 - BWI76_RS03960 0.68 -0.6 820,349 - BWI76_RS03960 0.68 +0.7 820,349 - BWI76_RS03960 0.68 -0.6 820,349 - BWI76_RS03960 0.68 +0.7 820,349 - BWI76_RS03960 0.68 -0.6 820,354 - BWI76_RS03960 0.69 -0.2 820,354 - BWI76_RS03960 0.69 -2.3 820,354 - BWI76_RS03960 0.69 +1.6 820,354 - BWI76_RS03960 0.69 +3.4 820,354 - BWI76_RS03960 0.69 -1.6 820,354 - BWI76_RS03960 0.69 +1.5 820,356 - BWI76_RS03960 0.70 +0.9 820,408 - BWI76_RS03960 0.81 +0.4 820,411 + -1.0 820,418 - BWI76_RS03960 0.83 -0.9 820,422 + BWI76_RS03960 0.84 +1.4 820,430 - BWI76_RS03960 0.86 -0.0 820,432 + BWI76_RS03960 0.86 +1.6 820,433 + BWI76_RS03960 0.86 -1.8 820,439 + BWI76_RS03960 0.87 -0.6 820,440 - BWI76_RS03960 0.88 -0.6 820,441 + BWI76_RS03960 0.88 +0.2 820,441 + BWI76_RS03960 0.88 +0.5 820,441 + BWI76_RS03960 0.88 +1.1 820,441 - BWI76_RS03960 0.88 -2.7 820,447 - BWI76_RS03960 0.89 +1.6 820,449 - BWI76_RS03960 0.90 -1.0 820,449 - BWI76_RS03960 0.90 -1.0 820,449 - BWI76_RS03960 0.90 +1.0 820,449 - BWI76_RS03960 0.90 +0.6 820,449 - BWI76_RS03960 0.90 +0.1 820,449 - BWI76_RS03960 0.90 +1.7 820,456 + +0.4 820,463 - -1.3 820,476 + +1.3 820,510 + -0.2 820,510 + -0.0 820,510 + -2.0 820,510 + -1.5 820,518 - +0.2 820,518 - +0.5 820,518 - +1.3 820,518 - -1.3 820,518 - -1.3 820,518 - +0.3 820,518 - +0.2 820,518 - -1.1 820,518 - +1.0 820,526 + -0.5 820,534 - +1.0 820,544 - +0.3 820,544 - -2.3 820,620 + BWI76_RS03965 0.14 +0.4 820,625 + BWI76_RS03965 0.14 +0.8 820,628 - BWI76_RS03965 0.15 -1.8 820,721 - BWI76_RS03965 0.27 -3.0 820,809 - BWI76_RS03965 0.38 -0.0 820,843 + BWI76_RS03965 0.42 -0.2 820,882 - BWI76_RS03965 0.47 +0.5 820,892 - BWI76_RS03965 0.48 +0.8 820,965 - BWI76_RS03965 0.58 +0.5 821,214 + BWI76_RS03965 0.90 -0.7 821,327 - +0.3 821,357 + BWI76_RS03970 0.10 +1.1 821,450 + BWI76_RS03970 0.21 +0.6 821,703 - BWI76_RS03970 0.51 +1.6 821,723 + BWI76_RS03970 0.53 +0.8 821,802 + BWI76_RS03970 0.62 +1.5 821,817 - BWI76_RS03970 0.64 +1.3 821,866 - BWI76_RS03970 0.70 -0.6 821,881 + BWI76_RS03970 0.72 +1.5 822,038 + +0.4 822,161 - +1.4 822,379 + BWI76_RS03975 0.23 +0.3 822,440 + BWI76_RS03975 0.29 +0.9 822,501 - BWI76_RS03975 0.34 +0.0 822,644 - BWI76_RS03975 0.48 -0.3 822,727 + BWI76_RS03975 0.56 -2.2 822,964 - BWI76_RS03975 0.78 +1.7 822,966 - BWI76_RS03975 0.78 -0.0 823,008 - BWI76_RS03975 0.82 -2.2 823,008 - BWI76_RS03975 0.82 -1.5 823,014 - BWI76_RS03975 0.83 -0.3 823,043 + BWI76_RS03975 0.85 +0.6 823,044 + BWI76_RS03975 0.86 -2.0 823,044 + BWI76_RS03975 0.86 +1.1 823,052 - BWI76_RS03975 0.86 -0.3 823,052 - BWI76_RS03975 0.86 +0.5 823,052 - BWI76_RS03975 0.86 +0.1 823,052 - BWI76_RS03975 0.86 +0.1 823,052 - BWI76_RS03975 0.86 +0.3 823,052 - +1.4 823,052 - BWI76_RS03975 0.86 +0.3 823,052 - BWI76_RS03975 0.86 +0.4 823,062 - BWI76_RS03975 0.87 +0.2 823,062 - BWI76_RS03975 0.87 +0.6 823,063 + BWI76_RS03975 0.87 -0.4 823,069 + BWI76_RS03975 0.88 +0.6 823,071 - BWI76_RS03975 0.88 -1.6 823,085 - BWI76_RS03975 0.89 +0.6 823,088 + BWI76_RS03975 0.90 -1.3 823,098 + +0.5 823,098 + -0.1 823,098 + -1.0 823,098 + +0.7 823,098 + -0.6 823,098 + -0.6 823,098 + +1.0 823,098 + +0.1 823,098 + +0.1 823,098 + +0.7 823,098 + -0.9 823,101 - +0.3 823,106 - -0.2 823,106 - +1.0 823,106 - +1.6 823,106 - +1.1 823,106 - -2.8 823,106 - -1.0 823,109 + -0.2 823,118 - -0.7
Or see this region's nucleotide sequence