Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03890 and BWI76_RS03895 are separated by 10 nucleotides BWI76_RS03895 and BWI76_RS03900 are separated by 102 nucleotides
BWI76_RS03890: BWI76_RS03890 - hypothetical protein, at 804,287 to 805,726
_RS03890
BWI76_RS03895: BWI76_RS03895 - reactive intermediate/imine deaminase, at 805,737 to 806,129
_RS03895
BWI76_RS03900: BWI76_RS03900 - Na+/proline symporter, at 806,232 to 807,719
_RS03900
Position (kb) 805
806
807 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 804.875 kb on + strand, within BWI76_RS03890 at 805.095 kb on + strand, within BWI76_RS03890 at 805.123 kb on + strand, within BWI76_RS03890 at 805.162 kb on + strand, within BWI76_RS03890 at 805.184 kb on + strand, within BWI76_RS03890 at 805.413 kb on - strand, within BWI76_RS03890 at 805.629 kb on + strand at 805.629 kb on + strand at 805.637 kb on - strand at 805.645 kb on + strand at 805.653 kb on - strand at 805.663 kb on - strand at 805.736 kb on + strand at 805.770 kb on + strand at 805.788 kb on + strand, within BWI76_RS03895 at 805.809 kb on + strand, within BWI76_RS03895 at 805.874 kb on + strand, within BWI76_RS03895 at 805.905 kb on + strand, within BWI76_RS03895 at 805.913 kb on - strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.952 kb on - strand, within BWI76_RS03895 at 805.954 kb on + strand, within BWI76_RS03895 at 805.957 kb on - strand, within BWI76_RS03895 at 805.959 kb on + strand, within BWI76_RS03895 at 805.969 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.015 kb on + strand, within BWI76_RS03895 at 806.039 kb on + strand, within BWI76_RS03895 at 806.044 kb on - strand, within BWI76_RS03895 at 806.046 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.059 kb on - strand, within BWI76_RS03895 at 806.062 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.073 kb on + strand, within BWI76_RS03895 at 806.074 kb on - strand, within BWI76_RS03895 at 806.081 kb on - strand, within BWI76_RS03895 at 806.088 kb on + strand, within BWI76_RS03895 at 806.096 kb on + strand at 806.096 kb on + strand at 806.096 kb on - strand at 806.096 kb on - strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.192 kb on + strand at 806.192 kb on + strand at 806.192 kb on - strand at 806.194 kb on - strand at 806.194 kb on - strand at 806.199 kb on + strand at 806.199 kb on - strand at 806.199 kb on - strand at 806.201 kb on - strand at 806.201 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.209 kb on + strand at 806.230 kb on - strand at 806.257 kb on + strand at 806.265 kb on - strand at 806.276 kb on + strand at 806.284 kb on - strand at 806.285 kb on - strand at 806.287 kb on + strand at 806.289 kb on - strand at 806.290 kb on - strand at 806.290 kb on - strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.295 kb on - strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.300 kb on + strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.301 kb on - strand at 806.301 kb on - strand at 806.304 kb on - strand at 806.304 kb on - strand at 806.309 kb on - strand at 806.343 kb on + strand at 806.372 kb on + strand at 806.372 kb on + strand at 806.373 kb on + strand at 806.375 kb on - strand at 806.377 kb on + strand at 806.380 kb on - strand at 806.382 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.409 kb on + strand, within BWI76_RS03900 at 806.412 kb on - strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.419 kb on + strand, within BWI76_RS03900 at 806.432 kb on - strand, within BWI76_RS03900 at 806.464 kb on - strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.487 kb on + strand, within BWI76_RS03900 at 806.489 kb on + strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.502 kb on - strand, within BWI76_RS03900 at 806.504 kb on + strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.542 kb on + strand, within BWI76_RS03900 at 806.549 kb on + strand, within BWI76_RS03900 at 806.563 kb on - strand, within BWI76_RS03900 at 806.634 kb on - strand, within BWI76_RS03900 at 806.648 kb on - strand, within BWI76_RS03900 at 806.657 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.672 kb on - strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.741 kb on + strand, within BWI76_RS03900 at 806.749 kb on + strand, within BWI76_RS03900 at 806.751 kb on + strand at 806.754 kb on - strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.756 kb on + strand, within BWI76_RS03900 at 806.764 kb on - strand, within BWI76_RS03900 at 806.764 kb on - strand, within BWI76_RS03900 at 806.764 kb on - strand at 806.764 kb on - strand, within BWI76_RS03900 at 806.764 kb on - strand, within BWI76_RS03900 at 806.764 kb on - strand, within BWI76_RS03900 at 806.767 kb on + strand, within BWI76_RS03900 at 806.770 kb on + strand, within BWI76_RS03900 at 806.772 kb on + strand, within BWI76_RS03900 at 806.779 kb on - strand, within BWI76_RS03900 at 806.785 kb on - strand, within BWI76_RS03900 at 806.818 kb on + strand, within BWI76_RS03900 at 806.824 kb on + strand, within BWI76_RS03900 at 806.831 kb on + strand, within BWI76_RS03900 at 806.831 kb on + strand, within BWI76_RS03900 at 806.831 kb on + strand, within BWI76_RS03900 at 806.833 kb on - strand, within BWI76_RS03900 at 806.834 kb on - strand, within BWI76_RS03900 at 806.835 kb on + strand, within BWI76_RS03900 at 806.839 kb on + strand, within BWI76_RS03900 at 806.843 kb on + strand, within BWI76_RS03900 at 806.848 kb on + strand, within BWI76_RS03900 at 806.848 kb on + strand, within BWI76_RS03900 at 806.848 kb on + strand, within BWI76_RS03900 at 806.848 kb on - strand, within BWI76_RS03900 at 806.899 kb on + strand, within BWI76_RS03900 at 806.899 kb on + strand, within BWI76_RS03900 at 806.907 kb on - strand, within BWI76_RS03900 at 807.006 kb on - strand, within BWI76_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 804,875 + BWI76_RS03890 0.41 -1.8 805,095 + BWI76_RS03890 0.56 +1.9 805,123 + BWI76_RS03890 0.58 +2.3 805,162 + BWI76_RS03890 0.61 -0.1 805,184 + BWI76_RS03890 0.62 -0.8 805,413 - BWI76_RS03890 0.78 -0.6 805,629 + +1.5 805,629 + -0.2 805,637 - -1.6 805,645 + +0.7 805,653 - +2.4 805,663 - -0.0 805,736 + +0.6 805,770 + +1.4 805,788 + BWI76_RS03895 0.13 -1.3 805,809 + BWI76_RS03895 0.18 +0.1 805,874 + BWI76_RS03895 0.35 +1.0 805,905 + BWI76_RS03895 0.43 -0.0 805,913 - BWI76_RS03895 0.45 +0.9 805,938 + BWI76_RS03895 0.51 -1.0 805,938 + BWI76_RS03895 0.51 -0.3 805,952 - BWI76_RS03895 0.55 +3.0 805,954 + BWI76_RS03895 0.55 -3.2 805,957 - BWI76_RS03895 0.56 -0.0 805,959 + BWI76_RS03895 0.56 -0.2 805,969 + BWI76_RS03895 0.59 -0.6 805,993 + BWI76_RS03895 0.65 -0.2 805,993 + BWI76_RS03895 0.65 -0.4 806,001 - BWI76_RS03895 0.67 -0.9 806,001 - BWI76_RS03895 0.67 -3.5 806,014 - BWI76_RS03895 0.70 +0.2 806,014 - BWI76_RS03895 0.70 -1.8 806,015 + BWI76_RS03895 0.71 +1.2 806,039 + BWI76_RS03895 0.77 +1.0 806,044 - BWI76_RS03895 0.78 +1.0 806,046 + BWI76_RS03895 0.79 +0.4 806,051 + BWI76_RS03895 0.80 -0.1 806,051 + BWI76_RS03895 0.80 -0.8 806,051 + BWI76_RS03895 0.80 -0.3 806,059 - BWI76_RS03895 0.82 +0.4 806,062 + BWI76_RS03895 0.83 -0.1 806,069 + BWI76_RS03895 0.84 +0.6 806,069 + BWI76_RS03895 0.84 -1.6 806,069 + BWI76_RS03895 0.84 +1.6 806,069 + BWI76_RS03895 0.84 +0.9 806,070 - BWI76_RS03895 0.85 +0.9 806,070 - BWI76_RS03895 0.85 -1.3 806,073 + BWI76_RS03895 0.85 +0.3 806,074 - BWI76_RS03895 0.86 -1.3 806,081 - BWI76_RS03895 0.88 -1.1 806,088 + BWI76_RS03895 0.89 +1.1 806,096 + +0.7 806,096 + -2.5 806,096 - +2.2 806,096 - +0.7 806,097 + +0.3 806,097 + +0.5 806,097 + +1.1 806,097 + +1.8 806,097 + -2.1 806,097 + -0.4 806,097 + +0.2 806,097 + -0.5 806,097 + -0.4 806,097 + -0.8 806,105 - -0.0 806,105 - +0.1 806,105 - +0.5 806,105 - +1.0 806,105 - +1.8 806,105 - +2.3 806,105 - -3.0 806,105 - +0.9 806,105 - +0.2 806,105 - +1.1 806,105 - +0.2 806,105 - -0.6 806,105 - +1.4 806,105 - -0.6 806,105 - +0.5 806,105 - -1.5 806,105 - -1.1 806,107 + +1.3 806,107 + +1.2 806,107 + +0.4 806,107 + -0.6 806,107 + -0.6 806,107 + -1.8 806,107 + +0.6 806,107 + +0.4 806,107 + +0.6 806,107 + +1.6 806,107 + +1.0 806,107 + -1.3 806,107 + -2.3 806,107 + +0.9 806,107 + +1.0 806,107 + -1.0 806,107 + -0.9 806,115 - -2.4 806,115 - +0.9 806,115 - -0.6 806,115 - +0.6 806,115 - +3.3 806,115 - +0.5 806,115 - +0.8 806,115 - +0.5 806,115 - +1.1 806,115 - -0.2 806,115 - +0.5 806,115 - -0.9 806,115 - +0.6 806,115 - -1.8 806,116 - -0.6 806,116 - +0.7 806,116 - -0.7 806,116 - +1.0 806,184 + +0.6 806,184 + -0.7 806,184 + +0.3 806,184 - -0.0 806,184 - -3.8 806,184 - +2.8 806,186 + +0.2 806,186 + +0.8 806,186 + -4.1 806,186 + +0.3 806,186 + +0.5 806,192 + -0.5 806,192 + -0.4 806,192 - +1.0 806,194 - +0.8 806,194 - +1.1 806,199 + +0.1 806,199 - -0.7 806,199 - +0.4 806,201 - -2.5 806,201 - +0.2 806,207 - -0.4 806,207 - +1.0 806,207 - +0.7 806,207 - +0.2 806,207 - -0.7 806,207 - +0.2 806,209 + -0.5 806,230 - -0.3 806,257 + -1.3 806,265 - -2.0 806,276 + -2.0 806,284 - -1.3 806,285 - +0.3 806,287 + +1.6 806,289 - -0.8 806,290 - +1.0 806,290 - +0.7 806,293 + +2.3 806,293 + +2.0 806,293 + -0.6 806,295 - -0.2 806,296 + +4.5 806,296 + +0.8 806,296 + -0.4 806,300 + +0.5 806,300 - -1.6 806,300 - +0.8 806,300 - +1.1 806,301 - -2.2 806,301 - +1.1 806,304 - -0.3 806,304 - -3.0 806,309 - -0.3 806,343 + -0.0 806,372 + -0.1 806,372 + +1.4 806,373 + +0.0 806,375 - +1.8 806,377 + +2.4 806,380 - +0.1 806,382 - BWI76_RS03900 0.10 -0.0 806,401 - BWI76_RS03900 0.11 +2.2 806,401 - BWI76_RS03900 0.11 +1.0 806,401 - BWI76_RS03900 0.11 -0.1 806,404 + BWI76_RS03900 0.12 -0.4 806,404 + BWI76_RS03900 0.12 +0.5 806,404 + BWI76_RS03900 0.12 +0.9 806,409 + BWI76_RS03900 0.12 +1.2 806,412 - BWI76_RS03900 0.12 +1.0 806,418 + BWI76_RS03900 0.12 +0.1 806,418 + BWI76_RS03900 0.12 -0.2 806,419 + BWI76_RS03900 0.13 +0.6 806,432 - BWI76_RS03900 0.13 +1.1 806,464 - BWI76_RS03900 0.16 -1.0 806,482 + BWI76_RS03900 0.17 -0.2 806,482 + BWI76_RS03900 0.17 +0.3 806,482 + BWI76_RS03900 0.17 -2.0 806,482 + BWI76_RS03900 0.17 +0.9 806,487 + BWI76_RS03900 0.17 +0.7 806,489 + BWI76_RS03900 0.17 +0.0 806,490 - BWI76_RS03900 0.17 +0.1 806,490 - BWI76_RS03900 0.17 -0.2 806,490 - BWI76_RS03900 0.17 -0.8 806,502 - BWI76_RS03900 0.18 +1.0 806,504 + BWI76_RS03900 0.18 -0.3 806,512 - BWI76_RS03900 0.19 +0.9 806,512 - BWI76_RS03900 0.19 +0.6 806,512 - BWI76_RS03900 0.19 -0.6 806,512 - BWI76_RS03900 0.19 -0.6 806,512 - BWI76_RS03900 0.19 +0.0 806,542 + BWI76_RS03900 0.21 +0.0 806,549 + BWI76_RS03900 0.21 +0.0 806,563 - BWI76_RS03900 0.22 -1.0 806,634 - BWI76_RS03900 0.27 +2.0 806,648 - BWI76_RS03900 0.28 +1.8 806,657 + BWI76_RS03900 0.29 +1.3 806,658 + BWI76_RS03900 0.29 +1.2 806,658 + BWI76_RS03900 0.29 -0.1 806,663 + BWI76_RS03900 0.29 +0.4 806,663 + BWI76_RS03900 0.29 +0.6 806,666 - BWI76_RS03900 0.29 -2.7 806,666 - BWI76_RS03900 0.29 -1.1 806,672 - BWI76_RS03900 0.30 -0.1 806,676 + BWI76_RS03900 0.30 +0.4 806,676 + BWI76_RS03900 0.30 +1.4 806,709 + BWI76_RS03900 0.32 +0.0 806,709 + BWI76_RS03900 0.32 +0.6 806,709 + BWI76_RS03900 0.32 +0.6 806,717 - BWI76_RS03900 0.33 +1.3 806,717 - BWI76_RS03900 0.33 +2.4 806,717 - BWI76_RS03900 0.33 -1.3 806,741 + BWI76_RS03900 0.34 +2.7 806,749 + BWI76_RS03900 0.35 +0.2 806,751 + +1.0 806,754 - BWI76_RS03900 0.35 +0.4 806,756 + BWI76_RS03900 0.35 +0.4 806,756 + BWI76_RS03900 0.35 +0.7 806,756 + BWI76_RS03900 0.35 -4.8 806,756 + BWI76_RS03900 0.35 +1.7 806,756 + BWI76_RS03900 0.35 +1.4 806,756 + BWI76_RS03900 0.35 +1.4 806,756 + BWI76_RS03900 0.35 -3.8 806,764 - BWI76_RS03900 0.36 +0.0 806,764 - BWI76_RS03900 0.36 -0.6 806,764 - +0.0 806,764 - BWI76_RS03900 0.36 +1.6 806,764 - BWI76_RS03900 0.36 -0.2 806,764 - BWI76_RS03900 0.36 +1.8 806,767 + BWI76_RS03900 0.36 -2.3 806,770 + BWI76_RS03900 0.36 +0.3 806,772 + BWI76_RS03900 0.36 +0.4 806,779 - BWI76_RS03900 0.37 +0.4 806,785 - BWI76_RS03900 0.37 +2.3 806,818 + BWI76_RS03900 0.39 +0.1 806,824 + BWI76_RS03900 0.40 -2.0 806,831 + BWI76_RS03900 0.40 +0.5 806,831 + BWI76_RS03900 0.40 -0.4 806,831 + BWI76_RS03900 0.40 +3.0 806,833 - BWI76_RS03900 0.40 +2.1 806,834 - BWI76_RS03900 0.40 +1.0 806,835 + BWI76_RS03900 0.41 -2.6 806,839 + BWI76_RS03900 0.41 -0.2 806,843 + BWI76_RS03900 0.41 +1.6 806,848 + BWI76_RS03900 0.41 +0.6 806,848 + BWI76_RS03900 0.41 -0.1 806,848 + BWI76_RS03900 0.41 -0.2 806,848 - BWI76_RS03900 0.41 -0.5 806,899 + BWI76_RS03900 0.45 -0.0 806,899 + BWI76_RS03900 0.45 +0.0 806,907 - BWI76_RS03900 0.45 -0.8 807,006 - BWI76_RS03900 0.52 +0.1
Or see this region's nucleotide sequence