Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03820 and BWI76_RS03825 are separated by 295 nucleotides BWI76_RS03825 and BWI76_RS03830 are separated by 19 nucleotides
BWI76_RS03820: BWI76_RS03820 - carbon starvation protein A, at 788,913 to 791,063
_RS03820
BWI76_RS03825: BWI76_RS03825 - 4-hydroxyphenylacetate 3-monooxygenase, at 791,359 to 791,871
_RS03825
BWI76_RS03830: BWI76_RS03830 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 791,891 to 793,453
_RS03830
Position (kb) 791
792 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 790.438 kb on + strand, within BWI76_RS03820 at 790.446 kb on - strand, within BWI76_RS03820 at 790.480 kb on - strand, within BWI76_RS03820 at 790.662 kb on + strand, within BWI76_RS03820 at 790.662 kb on + strand, within BWI76_RS03820 at 790.723 kb on - strand, within BWI76_RS03820 at 790.829 kb on - strand, within BWI76_RS03820 at 790.829 kb on - strand, within BWI76_RS03820 at 790.849 kb on + strand at 790.872 kb on - strand at 790.962 kb on + strand at 790.972 kb on + strand at 791.031 kb on + strand at 791.039 kb on - strand at 791.129 kb on - strand at 791.234 kb on + strand at 791.442 kb on - strand, within BWI76_RS03825 at 791.475 kb on - strand, within BWI76_RS03825 at 791.493 kb on - strand, within BWI76_RS03825 at 791.504 kb on - strand at 791.530 kb on + strand, within BWI76_RS03825 at 791.652 kb on - strand, within BWI76_RS03825 at 791.652 kb on - strand, within BWI76_RS03825 at 791.835 kb on - strand at 791.854 kb on + strand at 792.365 kb on - strand, within BWI76_RS03830 at 792.539 kb on + strand, within BWI76_RS03830 at 792.703 kb on - strand, within BWI76_RS03830 at 792.727 kb on + strand, within BWI76_RS03830 at 792.738 kb on - strand, within BWI76_RS03830 at 792.803 kb on - strand, within BWI76_RS03830 at 792.818 kb on - strand, within BWI76_RS03830 at 792.851 kb on + strand, within BWI76_RS03830
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 790,438 + BWI76_RS03820 0.71 +0.4 790,446 - BWI76_RS03820 0.71 +0.7 790,480 - BWI76_RS03820 0.73 -0.2 790,662 + BWI76_RS03820 0.81 +0.6 790,662 + BWI76_RS03820 0.81 -0.2 790,723 - BWI76_RS03820 0.84 +0.1 790,829 - BWI76_RS03820 0.89 -0.7 790,829 - BWI76_RS03820 0.89 +0.0 790,849 + -0.1 790,872 - +0.6 790,962 + +0.2 790,972 + +1.0 791,031 + -0.4 791,039 - -0.9 791,129 - +0.7 791,234 + +0.0 791,442 - BWI76_RS03825 0.16 +0.9 791,475 - BWI76_RS03825 0.23 -1.8 791,493 - BWI76_RS03825 0.26 -0.3 791,504 - +2.2 791,530 + BWI76_RS03825 0.33 +1.7 791,652 - BWI76_RS03825 0.57 +3.4 791,652 - BWI76_RS03825 0.57 +0.3 791,835 - +0.6 791,854 + +3.3 792,365 - BWI76_RS03830 0.30 +0.9 792,539 + BWI76_RS03830 0.41 -0.5 792,703 - BWI76_RS03830 0.52 -1.6 792,727 + BWI76_RS03830 0.53 -0.7 792,738 - BWI76_RS03830 0.54 +1.4 792,803 - BWI76_RS03830 0.58 -0.6 792,818 - BWI76_RS03830 0.59 -1.1 792,851 + BWI76_RS03830 0.61 +0.3
Or see this region's nucleotide sequence