Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03755 and BWI76_RS03760 overlap by 1 nucleotides BWI76_RS03760 and BWI76_RS03765 are separated by 10 nucleotides BWI76_RS03765 and BWI76_RS03770 are separated by 163 nucleotides
BWI76_RS03755: BWI76_RS03755 - phosphoadenosine phosphosulfate reductase, at 777,414 to 778,625
_RS03755
BWI76_RS03760: BWI76_RS03760 - hypothetical protein, at 778,625 to 779,251
_RS03760
BWI76_RS03765: BWI76_RS03765 - MFS transporter, at 779,262 to 780,503
_RS03765
BWI76_RS03770: BWI76_RS03770 - DUF445 domain-containing protein, at 780,667 to 781,956
_RS03770
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 778.279 kb on + strand, within BWI76_RS03755 at 778.287 kb on - strand, within BWI76_RS03755 at 778.559 kb on + strand at 778.566 kb on - strand at 778.568 kb on - strand at 778.576 kb on - strand at 778.627 kb on - strand at 778.724 kb on - strand, within BWI76_RS03760 at 778.806 kb on + strand, within BWI76_RS03760 at 778.806 kb on + strand, within BWI76_RS03760 at 778.814 kb on - strand, within BWI76_RS03760 at 778.874 kb on - strand, within BWI76_RS03760 at 778.933 kb on + strand, within BWI76_RS03760 at 778.973 kb on + strand, within BWI76_RS03760 at 779.072 kb on + strand, within BWI76_RS03760 at 779.121 kb on + strand, within BWI76_RS03760 at 779.242 kb on - strand at 779.622 kb on + strand, within BWI76_RS03765 at 779.688 kb on - strand, within BWI76_RS03765 at 779.695 kb on - strand, within BWI76_RS03765 at 779.877 kb on + strand, within BWI76_RS03765 at 779.908 kb on - strand, within BWI76_RS03765 at 780.009 kb on + strand, within BWI76_RS03765 at 780.017 kb on - strand, within BWI76_RS03765 at 780.151 kb on + strand, within BWI76_RS03765 at 780.180 kb on + strand, within BWI76_RS03765 at 780.180 kb on + strand, within BWI76_RS03765 at 780.224 kb on + strand, within BWI76_RS03765 at 780.224 kb on + strand, within BWI76_RS03765 at 780.232 kb on - strand, within BWI76_RS03765 at 780.241 kb on + strand, within BWI76_RS03765 at 780.251 kb on + strand, within BWI76_RS03765 at 780.316 kb on + strand, within BWI76_RS03765 at 780.374 kb on - strand, within BWI76_RS03765 at 780.582 kb on + strand at 780.722 kb on - strand at 780.739 kb on - strand at 780.942 kb on - strand, within BWI76_RS03770 at 781.159 kb on + strand, within BWI76_RS03770 at 781.165 kb on + strand, within BWI76_RS03770 at 781.184 kb on + strand, within BWI76_RS03770 at 781.221 kb on - strand, within BWI76_RS03770 at 781.273 kb on - strand, within BWI76_RS03770 at 781.349 kb on + strand, within BWI76_RS03770 at 781.414 kb on + strand, within BWI76_RS03770 at 781.477 kb on - strand, within BWI76_RS03770 at 781.489 kb on - strand, within BWI76_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 778,279 + BWI76_RS03755 0.71 +1.3 778,287 - BWI76_RS03755 0.72 +0.2 778,559 + +0.1 778,566 - -1.0 778,568 - +1.0 778,576 - -2.0 778,627 - -1.0 778,724 - BWI76_RS03760 0.16 -0.3 778,806 + BWI76_RS03760 0.29 -0.6 778,806 + BWI76_RS03760 0.29 -1.6 778,814 - BWI76_RS03760 0.30 +0.6 778,874 - BWI76_RS03760 0.40 +0.8 778,933 + BWI76_RS03760 0.49 -0.7 778,973 + BWI76_RS03760 0.56 +1.8 779,072 + BWI76_RS03760 0.71 -0.3 779,121 + BWI76_RS03760 0.79 -0.3 779,242 - -0.6 779,622 + BWI76_RS03765 0.29 +0.4 779,688 - BWI76_RS03765 0.34 -0.9 779,695 - BWI76_RS03765 0.35 +1.4 779,877 + BWI76_RS03765 0.50 +2.7 779,908 - BWI76_RS03765 0.52 +2.8 780,009 + BWI76_RS03765 0.60 +0.7 780,017 - BWI76_RS03765 0.61 +0.3 780,151 + BWI76_RS03765 0.72 -0.6 780,180 + BWI76_RS03765 0.74 +0.7 780,180 + BWI76_RS03765 0.74 +0.9 780,224 + BWI76_RS03765 0.77 +0.0 780,224 + BWI76_RS03765 0.77 +2.6 780,232 - BWI76_RS03765 0.78 +0.9 780,241 + BWI76_RS03765 0.79 +0.5 780,251 + BWI76_RS03765 0.80 -1.3 780,316 + BWI76_RS03765 0.85 +0.6 780,374 - BWI76_RS03765 0.90 +0.5 780,582 + -1.9 780,722 - +0.2 780,739 - +0.5 780,942 - BWI76_RS03770 0.21 -0.6 781,159 + BWI76_RS03770 0.38 -0.5 781,165 + BWI76_RS03770 0.39 +0.8 781,184 + BWI76_RS03770 0.40 -1.6 781,221 - BWI76_RS03770 0.43 +0.2 781,273 - BWI76_RS03770 0.47 +0.6 781,349 + BWI76_RS03770 0.53 +0.9 781,414 + BWI76_RS03770 0.58 +0.6 781,477 - BWI76_RS03770 0.63 +0.6 781,489 - BWI76_RS03770 0.64 -0.5
Or see this region's nucleotide sequence