Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03125 and BWI76_RS03130 are separated by 10 nucleotides BWI76_RS03130 and BWI76_RS03135 overlap by 11 nucleotides BWI76_RS03135 and BWI76_RS03140 are separated by 190 nucleotides
BWI76_RS03125: BWI76_RS03125 - phosphodiesterase, at 644,398 to 645,222
_RS03125
BWI76_RS03130: BWI76_RS03130 - putative SN-glycerol-3-phosphate transport system permease, at 645,233 to 646,120
_RS03130
BWI76_RS03135: BWI76_RS03135 - sugar ABC transporter permease, at 646,110 to 646,982
_RS03135
BWI76_RS03140: BWI76_RS03140 - alcohol dehydrogenase, at 647,173 to 648,192
_RS03140
Position (kb) 646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 645.462 kb on - strand, within BWI76_RS03130 at 645.476 kb on + strand, within BWI76_RS03130 at 645.484 kb on - strand, within BWI76_RS03130 at 645.484 kb on - strand, within BWI76_RS03130 at 645.523 kb on - strand, within BWI76_RS03130 at 645.634 kb on + strand, within BWI76_RS03130 at 645.801 kb on + strand, within BWI76_RS03130 at 645.984 kb on + strand, within BWI76_RS03130 at 646.016 kb on + strand, within BWI76_RS03130 at 646.024 kb on - strand, within BWI76_RS03130 at 646.254 kb on - strand, within BWI76_RS03135 at 646.254 kb on - strand, within BWI76_RS03135 at 646.321 kb on + strand, within BWI76_RS03135 at 646.421 kb on + strand, within BWI76_RS03135 at 646.524 kb on - strand, within BWI76_RS03135 at 646.541 kb on + strand, within BWI76_RS03135 at 646.598 kb on + strand, within BWI76_RS03135 at 646.606 kb on - strand, within BWI76_RS03135 at 646.606 kb on - strand, within BWI76_RS03135 at 646.606 kb on - strand, within BWI76_RS03135 at 646.639 kb on + strand, within BWI76_RS03135 at 646.647 kb on + strand, within BWI76_RS03135 at 646.768 kb on + strand, within BWI76_RS03135 at 646.768 kb on + strand, within BWI76_RS03135 at 646.881 kb on - strand, within BWI76_RS03135 at 646.887 kb on + strand, within BWI76_RS03135 at 647.206 kb on + strand at 647.260 kb on - strand at 647.274 kb on + strand at 647.378 kb on - strand, within BWI76_RS03140 at 647.610 kb on + strand, within BWI76_RS03140 at 647.632 kb on - strand, within BWI76_RS03140 at 647.891 kb on + strand, within BWI76_RS03140 at 647.899 kb on - strand, within BWI76_RS03140 at 647.945 kb on + strand, within BWI76_RS03140 at 647.954 kb on + strand, within BWI76_RS03140 at 647.954 kb on + strand, within BWI76_RS03140
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 645,462 - BWI76_RS03130 0.26 -0.8 645,476 + BWI76_RS03130 0.27 -1.5 645,484 - BWI76_RS03130 0.28 -2.9 645,484 - BWI76_RS03130 0.28 +0.4 645,523 - BWI76_RS03130 0.33 -0.2 645,634 + BWI76_RS03130 0.45 -0.8 645,801 + BWI76_RS03130 0.64 +1.3 645,984 + BWI76_RS03130 0.85 -2.7 646,016 + BWI76_RS03130 0.88 +0.1 646,024 - BWI76_RS03130 0.89 -0.5 646,254 - BWI76_RS03135 0.16 +2.1 646,254 - BWI76_RS03135 0.16 -0.3 646,321 + BWI76_RS03135 0.24 +0.1 646,421 + BWI76_RS03135 0.36 +0.5 646,524 - BWI76_RS03135 0.47 +0.9 646,541 + BWI76_RS03135 0.49 +1.1 646,598 + BWI76_RS03135 0.56 -1.5 646,606 - BWI76_RS03135 0.57 -1.6 646,606 - BWI76_RS03135 0.57 +0.1 646,606 - BWI76_RS03135 0.57 +1.2 646,639 + BWI76_RS03135 0.61 +0.6 646,647 + BWI76_RS03135 0.62 -0.9 646,768 + BWI76_RS03135 0.75 +1.9 646,768 + BWI76_RS03135 0.75 -2.7 646,881 - BWI76_RS03135 0.88 +0.8 646,887 + BWI76_RS03135 0.89 +0.1 647,206 + -1.4 647,260 - -0.7 647,274 + +0.8 647,378 - BWI76_RS03140 0.20 +0.1 647,610 + BWI76_RS03140 0.43 +0.1 647,632 - BWI76_RS03140 0.45 +0.1 647,891 + BWI76_RS03140 0.70 -0.5 647,899 - BWI76_RS03140 0.71 -1.0 647,945 + BWI76_RS03140 0.76 -1.9 647,954 + BWI76_RS03140 0.77 -2.5 647,954 + BWI76_RS03140 0.77 -1.0
Or see this region's nucleotide sequence