Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03095 and BWI76_RS03100 are separated by 41 nucleotides BWI76_RS03100 and BWI76_RS03105 are separated by 24 nucleotides
BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) <small>(from data)</small>, at 637,168 to 638,181
_RS03095
BWI76_RS03100: BWI76_RS03100 - protein iolH, at 638,223 to 639,107
_RS03100
BWI76_RS03105: BWI76_RS03105 - myo-inosose-2 dehydratase, at 639,132 to 640,031
_RS03105
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 637.410 kb on - strand, within BWI76_RS03095 at 637.439 kb on + strand, within BWI76_RS03095 at 637.923 kb on + strand, within BWI76_RS03095 at 638.203 kb on + strand at 638.221 kb on - strand at 638.257 kb on + strand at 638.597 kb on - strand, within BWI76_RS03100 at 638.782 kb on + strand, within BWI76_RS03100 at 638.801 kb on - strand, within BWI76_RS03100 at 638.887 kb on - strand, within BWI76_RS03100 at 638.951 kb on + strand, within BWI76_RS03100 at 638.959 kb on - strand, within BWI76_RS03100 at 639.037 kb on - strand at 639.070 kb on + strand at 639.071 kb on - strand at 639.071 kb on - strand at 639.214 kb on - strand at 639.769 kb on - strand, within BWI76_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 637,410 - BWI76_RS03095 0.24 +0.1 637,439 + BWI76_RS03095 0.27 -0.2 637,923 + BWI76_RS03095 0.74 +0.2 638,203 + +0.8 638,221 - +1.1 638,257 + -0.2 638,597 - BWI76_RS03100 0.42 +0.5 638,782 + BWI76_RS03100 0.63 -2.4 638,801 - BWI76_RS03100 0.65 +1.0 638,887 - BWI76_RS03100 0.75 +0.4 638,951 + BWI76_RS03100 0.82 +1.0 638,959 - BWI76_RS03100 0.83 -0.5 639,037 - -0.1 639,070 + -0.7 639,071 - -2.8 639,071 - -0.5 639,214 - -1.2 639,769 - BWI76_RS03105 0.71 +1.7
Or see this region's nucleotide sequence