Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03090 and BWI76_RS03095 are separated by 48 nucleotides BWI76_RS03095 and BWI76_RS03100 are separated by 41 nucleotides BWI76_RS03100 and BWI76_RS03105 are separated by 24 nucleotides
BWI76_RS03090: BWI76_RS03090 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 635,179 to 637,119
_RS03090
BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) <small>(from data)</small>, at 637,168 to 638,181
_RS03095
BWI76_RS03100: BWI76_RS03100 - protein iolH, at 638,223 to 639,107
_RS03100
BWI76_RS03105: BWI76_RS03105 - myo-inosose-2 dehydratase, at 639,132 to 640,031
_RS03105
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 636.326 kb on + strand, within BWI76_RS03090 at 636.425 kb on + strand, within BWI76_RS03090 at 636.610 kb on - strand, within BWI76_RS03090 at 636.627 kb on - strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.703 kb on + strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.848 kb on + strand, within BWI76_RS03090 at 636.985 kb on - strand at 637.410 kb on - strand, within BWI76_RS03095 at 637.439 kb on + strand, within BWI76_RS03095 at 637.923 kb on + strand, within BWI76_RS03095 at 638.203 kb on + strand at 638.221 kb on - strand at 638.257 kb on + strand at 638.597 kb on - strand, within BWI76_RS03100 at 638.782 kb on + strand, within BWI76_RS03100 at 638.801 kb on - strand, within BWI76_RS03100 at 638.887 kb on - strand, within BWI76_RS03100 at 638.951 kb on + strand, within BWI76_RS03100 at 638.959 kb on - strand, within BWI76_RS03100 at 639.037 kb on - strand at 639.070 kb on + strand at 639.071 kb on - strand at 639.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 636,326 + BWI76_RS03090 0.59 +0.4 636,425 + BWI76_RS03090 0.64 +0.5 636,610 - BWI76_RS03090 0.74 -0.8 636,627 - BWI76_RS03090 0.75 +0.5 636,701 + BWI76_RS03090 0.78 +1.1 636,701 + BWI76_RS03090 0.78 -1.7 636,701 + BWI76_RS03090 0.78 +0.5 636,701 + BWI76_RS03090 0.78 +0.1 636,701 + BWI76_RS03090 0.78 -0.8 636,703 + BWI76_RS03090 0.79 -1.0 636,709 - BWI76_RS03090 0.79 -0.6 636,709 - BWI76_RS03090 0.79 -0.0 636,709 - BWI76_RS03090 0.79 -0.0 636,848 + BWI76_RS03090 0.86 +0.7 636,985 - +0.1 637,410 - BWI76_RS03095 0.24 +0.1 637,439 + BWI76_RS03095 0.27 -0.2 637,923 + BWI76_RS03095 0.74 +0.2 638,203 + +0.8 638,221 - +1.1 638,257 + -0.2 638,597 - BWI76_RS03100 0.42 +0.5 638,782 + BWI76_RS03100 0.63 -2.4 638,801 - BWI76_RS03100 0.65 +1.0 638,887 - BWI76_RS03100 0.75 +0.4 638,951 + BWI76_RS03100 0.82 +1.0 638,959 - BWI76_RS03100 0.83 -0.5 639,037 - -0.1 639,070 + -0.7 639,071 - -2.8 639,071 - -0.5
Or see this region's nucleotide sequence